XLOC_024110 (CR354549.3)


Basic Information

Item Value
gene id XLOC_024110
gene name CR354549.3
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 23202011 ~ 23229282 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047830
tttctatttttttctttaaaatgtcagCAGCCTCTGCTACAACAAACTCTCCATTAACTGTGTCTTCAACATCAGCTCCTTCATCATCTCCTGCCAATACAACCTCCTCTACAACTGAATCTCAAAATACAAcatcTTCTGCCAATACAATCTCTTCTACAAATGAGGCTCACACAACTGCTGCACCTACAAGTAAGTAATGTATAAATAAAGTTGACTATATTTGGAGAGTTTTAGCATGTTACAGTTAT
>TCONS_00047831
CGTCCTATGCCAGTACAAGCACTTCTGAGTCTCAAACATCAGGACCTACAAGTAAGCAATGCTGTATTTTATGTAGTTGTTTAAACACGTTGTtagaaacattttaacatttttctgctgttgtttattgTAATAATCAATGCTACATGTATTTCAAATCACCTTCTGTCATGTGTTCAGTAATATTAACAGTGTGTACTGTGTTACAGCACTTATGTGATGTTTGTTAGAAATTGGTGTAATAACATTTAATGCAATTCAGAATTTCATTGTATGAGAAAAATGTTATATGAATGTcgacaaatattaataaaagtgtctTCTGTCTCTTCATTGATCAAAAAATTTCCAGCAGCCACAACAAACTATCCTTCATCTCAAACACCAACTTCAACCAGTGCAACGGCAAACTCTACTTCAACTGCATCTCCAACATCAACTCAAAcaacGTCCCCTGCCAGTACTTCTGAAACATCAGGACCTACTAGTAAGCAATGCTTTATTTTATGTAGTTGTTTAAACGCTTTATTAGAAACATTTTACAAGTTTGCAATTCTTGCAAATATTCTGCAAGTTCTGCAGATATTTATTCTAATAATCATACCTTCATATATTTCAAATCACCTCCCATCATGCACCAGCACCTTTAGTAATACGAACAATGTTTACTGCTAA
>TCONS_00047832
TTCTTTTTCTTCATTCATCAAAACTTCCCAGCAGCCAGTGCAACGGCAAACTCTACTTCAACTGCATCTCCAACATCAACTCAAAcaacGTCCCCTGCCAGTACTTCTGAAACATCAGGACCTACTACCACTGCCACAACAAACTCTCCATCATCAACACCAGCTGCCAGTACAAGGTCTTCTACGACTGAGTCTCAAACAACAACATCTACAAGTCCCGCAGCCATTGCAACAACAGCTTCTACATCAACTGTGTTACCAACATCATTTCCTTCAAcatctCATGCCAGTACAAACTCTTCTACAACTGAATCTCAAACAGCAGCACCTACaaATTCTCATTCAACTGTGTCTCAAACATCAACATCTCCTTTAACCTCTGCTACAACAAACTCTACTTCATCTGAGACTCCAACATCAGCTTCTTCAAACTCTCATTCAACTGTGTCTCAAACATCAACATCTCCTTTAACCTCTGCTACAACAAGCTCTACTTCAACTGAGACTCCAACATCAGCTCCTTCAACAGCCTCTGCCACAGCAAACACTCCTCCAACTGAGACTCCAACATCAGCTCCTTCAACCCCTGCCACAACAAACTCTTCTCCAACATCAGCTCCTTCAACATCTCCTGCCAATACAACCTCCTCTACAACTGAATCTCAAAATACAAcatcTTCTGCCAATACAATCTCTTCTACAAATGAGGCTCACACAACTGCTGCACCTACAACAGTCTCAACCAGTACAAAAACTTCTACGACTGAGTCTCAAACAACAGCGAATACAAGTATGTAAAAGATATGTACAGCTGTCTAAATACTTGATAAGAAATGTTTTACCAATGACTGTTGATG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117406

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047830 False 251 lncRNA 0.36 3 23202011 23228721
TCONS_00047831 False 675 lncRNA 0.34 3 23208292 23212267
TCONS_00047832 True 857 lncRNA 0.42 15 23209141 23229282

Neighbor

gene id symbol gene type direction distance location
XLOC_024109 CR354549.5 coding upstream 202 23200066 ~ 23201809 (+)
XLOC_024108 CR354549.10 coding upstream 13496 23187376 ~ 23188515 (+)
XLOC_024107 CR354549.9 coding upstream 24178 23170301 ~ 23177833 (+)
XLOC_024106 CR354549.12 coding upstream 33781 23165191 ~ 23168230 (+)
XLOC_024105 CR354549.1 coding upstream 36987 23163952 ~ 23165024 (+)
XLOC_024112 CR354549.7 coding downstream 876 23230158 ~ 23244411 (+)
XLOC_024113 NA coding downstream 22506 23251788 ~ 23265932 (+)
XLOC_024114 ptprjb.1 coding downstream 50938 23280220 ~ 23296524 (+)
XLOC_024115 ptprjb.2 coding downstream 107028 23336310 ~ 23347677 (+)
XLOC_024116 osbpl5 coding downstream 129642 23358924 ~ 23450962 (+)
XLOC_023973 CR762411.1 misc upstream 7983902 15217824 ~ 15218109 (+)
XLOC_024119 CU024870.1 non-coding downstream 317297 23546579 ~ 23546696 (+)
XLOC_024122 NA non-coding downstream 486083 23715365 ~ 23717669 (+)
XLOC_024124 AL954320.1 non-coding downstream 821766 24051048 ~ 24052227 (+)

Expression


Co-expression Network