XLOC_024115 (ptprjb.2)


Basic Information

Item Value
gene id XLOC_024115
gene name ptprjb.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 23336310 ~ 23347677 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047838
TTGCTTTGAGGATAGAAGAGTATGAAGAGTACTTTAAGCAGAAATGTGCTGATTCCAACCATGGTTTTGCCATAGAGTACGAgGAGTTAAGATTTGTTGGAACAGCACAGGCAAATACCGCCGCCCTGGCTCTTGAAAACAAGGAGAAGAATCGTTACTTAAATGTTTTACCTTATGATGCTTCAAGAGTGAAATTACTGAAATGTGAAAACCCCTTTGATGACTACATTAATGCTAACTATGTGCCAGGCTACAATTCAAGAAAAGAGTTTATAGCTGCTCAGGGTCCATTGCCCGTCACGATAAACAAATTTTGGAGAATGATCTGGGAGAACAAAGTCTACACCATAGTGATGCTGACCAAATGCAACGAGCTGGGAAAAGTGAAATGTGAAAAGTACTGGCCATCTGAGACTGACTTTTATCATAACATCTCTGTGACAACCACCTCAGAGACAGAACTGGACGACTGGACAATTAGAGACTTCAGTATCAAAAACGTGGAAACAGAAGAAACTTGTAATGTACGCCAGTTCCACTTCACAGCGTGGCCGGATCATGGAGTTCCAGAAACCACTGAGGTCCTTATTGAGTTTAGGCACCTGGTGAGAGAACATATGAACCAGTACTCATGCACCTCTCCAACCGTGGTGCATTGCAGTGCTGGTGTGGGAAGAACAGGGACATTCATTGCCATTGACCACCTGATCTCCCAGATTGAAAGGGACAGCATGGTGGACATCTACGGAATTGTTCATGATATGCGCATGCACAGGGCTCTCATGGTGCAGACTGAGGACCAGTATGTTTACCTCTACCAGTGTGCCTATGACCTCATTCAATCAAGAACTATGTCCAACAACTTAATTTACCAGAATACAGCATCATTTGAAATCTACCAGAATGTAGATTTTAAGGAAAACAAAGATAAGATGTCCTTTACCGAAGGATCAAATTTGTGAAATGGATACAATATATATTCTTGCACAGTAATCAAATCATTTgattaatgtactgtaaaaattaaaacacaaataatgca

Function

symbol description
ptprjb.2 Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in negative regulation of MAP kinase activity and protein dephosphorylation. Predicted to act upstream of or within dephosphorylation. Human ortholog(s) of this gene implicated in colorectal cancer. Orthologous to human PTPRJ (protein tyrosine phosphatase receptor type J).

GO:

id name namespace
GO:0043407 negative regulation of MAP kinase activity biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0016311 dephosphorylation biological_process
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131120-137 Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in negative regulation of MAP kinase activity and protein dephosphorylation. Predicted to act upstream of or within dephosphorylation. Human ortholog(s) of this gene implicated in colorectal cancer. Orthologous to human PTPRJ (protein tyrosine phosphatase receptor type J).

Ensembl:

ensembl_id ENSDARG00000086511

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047838 True 1042 mRNA 0.41 8 23336310 23347677

Neighbor

gene id symbol gene type direction distance location
XLOC_024114 ptprjb.1 coding upstream 39786 23280220 ~ 23296524 (+)
XLOC_024113 NA coding upstream 70378 23251788 ~ 23265932 (+)
XLOC_024112 CR354549.7 coding upstream 91899 23230158 ~ 23244411 (+)
XLOC_024110 CR354549.3 coding upstream 107028 23202011 ~ 23229282 (+)
XLOC_024111 NA coding upstream 130148 23205668 ~ 23206162 (+)
XLOC_024116 osbpl5 coding downstream 11247 23358924 ~ 23450962 (+)
XLOC_024117 CU024870.2 coding downstream 142302 23489979 ~ 23495448 (+)
XLOC_024118 CU024870.3 coding downstream 166036 23513713 ~ 23544998 (+)
XLOC_024119 CU024870.1 coding downstream 198902 23546579 ~ 23546696 (+)
XLOC_024120 cpt1ab coding downstream 244313 23591990 ~ 23645806 (+)
XLOC_023973 CR762411.1 misc upstream 8118201 15217824 ~ 15218109 (+)
XLOC_024109 CR354549.5 non-coding upstream 134501 23200066 ~ 23201809 (+)
XLOC_024122 NA non-coding downstream 367688 23715365 ~ 23717669 (+)
XLOC_024124 AL954320.1 non-coding downstream 703371 24051048 ~ 24052227 (+)
XLOC_024126 NA non-coding downstream 786177 24133854 ~ 24271786 (+)
XLOC_024129 BX649494.1 non-coding downstream 1020299 24367976 ~ 24368090 (+)

Expression


Co-expression Network