G476201


Basic Information

Item Value
gene id G476201
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 13929928 ~ 13932437 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU541346
aataatctgtgTAACTTGAGAGAGTAAGAGGAGGGCATCTCtccatatctcactctctctttctcaccatatctcactctctttctctccatatctcactctctctttctctccatatctcactctctctttctcaccatatctcactctctttctctccatatctcactctctctttctctccatatctcactctctctttctctccatatctcactctctctttctctccatatctcactctctctttctcaccatatctcactctcttctctccatatctcactctctttctctccatatctcactctttctctccatatctcactctctttctctccatatctcactctctttctctccatatctcactctctctttctctccatatctcactctctctttctcaccatatctcactctctttctctccatatctcactctctctttctctccatatctcactctctttctctccatatctcactctctttctctccatatctcactccctctttctcaccatttctcactctctctttctctctatatctcactctctttctcaccatatctcactctctttctctccatatctcactctctctttctcaccatatctcactctctctttctctccatatatCATTCTCTTTCTCACcatatctcactctctttctctccatatctcactctctctttctcaccatatctcactctctttctctccatatctcactctctttcgctccatatctctctctctctttctcatctcaccatatctcactctctttctctccatatctcactccctctttctctccatatctcactctctctttctcaccatatctcactctctctttctcaccatatctcactctctttctctccatatctcactctctttctctccatatctcactctctctttctcaccatatctcactctctttctctctatatatcactctctctttctctccatatctcactctctttctctccatatctcactctctctttctctccatatctcaatctctttctctccatatctcactctctttctctccatatctcactctctttctcaccatatctcactctctttctctccatatctcaatctctttctctccatatctcactctctctttctctccatatctcactctctctttctctccatatctcactcaatatctcactctttctttctctccatatctcactccctctttctcaccatttctcactctctttctctctatatctcactctctttctcaccatatctcactctctttctctccatatctcactctctctttctcaccatatctcactctctctttctctccatatctcactctctttctcaccatatctcactctctttctctccatatctcactctctctttctcaccatatctcactctctctttctctccatatctcactctctttcactccatatctcactccctctttctcaccatatctcactctctttctctccatatctcactctctttctctccatatctctctctctttctcaccatatctcactctctttctctccatatcactccctctttctctccatatctcactctctctttctcaccatatctcactctctctttctcaccatatctcactctctctttctcaccatatctcactctctttctctctatatatcactctctctttctctccatatctcactctctttctctccatatatcactctctctttctctccatatctcactctctttctctccatatctcactctctctttctctccatatctcaatctctttctctccatatctcactctctttctctccatatctcactctctttctcaccatatctcactctctttctctccatatctcaatctctttctctccatatctcactctctctttctctccatatctcactctctctttctctccatatctcactcaatatctcactctttctttctctcaatatctcactccctctttctcaccatatctcactctctctttctctccatatctcattctctttctcaccatatctctctctccatatctcactctttctttctctccatctctttctctatgAACGTCTAAAAAATGCAACAATACGAGACGCAAGAAGTGCTGGCGGGGAAGAAGAAAAGTAAAAGGAAGCTTCTTAAGCCAAGAATGTTGGTTAGGTTCCTGCTATTCCTCCGCTTGGCTGTGAGAAAAAAGATAACTGGTTTAGTGCTGAAATTCAGAGTAAAGTGTTCTCCTAAAGATCTTTCTATATGGCAAAGTGCTAAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU541346 True 2348 lncRNA 0.41 4 13929928 13932437

Neighbor

gene id symbol gene type direction distance location
LOC110525299 LOC106585791 coding upstream 196868 13726709 ~ 13733060 (+)
LOC118965067 NA coding upstream 605133 13322042 ~ 13324795 (+)
aqp3a LOC106585799 coding upstream 975869 12940770 ~ 12954059 (+)
nol6 nol6 coding upstream 1003980 12896951 ~ 12925948 (+)
arsk arsk coding upstream 1034152 12888485 ~ 12895776 (+)
gig2p LOC106585755 coding downstream 709295 14641732 ~ 14644594 (+)
LOC110525306 LOC106585757 coding downstream 759127 14691564 ~ 14706855 (+)
LOC110525102 LOC106585759 coding downstream 774440 14706877 ~ 14718733 (+)
LOC110525103 LOC106585761 coding downstream 903706 14836143 ~ 14890175 (+)
LOC110525309 LOC106585763 coding downstream 1037053 14969490 ~ 14995677 (+)
G476190 NA non-coding upstream 15397 13914168 ~ 13914531 (+)
G476185 NA non-coding upstream 28612 13901033 ~ 13901316 (+)
G476181 NA non-coding upstream 42199 13887200 ~ 13887729 (+)
G476180 NA non-coding upstream 45765 13883949 ~ 13884163 (+)
G476178 NA non-coding upstream 52958 13876734 ~ 13876970 (+)
G476208 NA non-coding downstream 12470 13944907 ~ 13945267 (+)
G476217 NA non-coding downstream 31120 13963557 ~ 13963771 (+)
G476218 NA non-coding downstream 31691 13964128 ~ 13964579 (+)
G476219 NA non-coding downstream 33987 13966424 ~ 13966710 (+)
G476223 NA non-coding downstream 39392 13971829 ~ 13972237 (+)
G475692 NA other upstream 615959 13313679 ~ 13313969 (+)
G474949 NA other upstream 1216630 12712306 ~ 12713298 (+)
G474851 NA other upstream 1425809 12503760 ~ 12504119 (+)
G474321 NA other upstream 1739356 12188288 ~ 12190572 (+)
G473070 NA other upstream 2650663 11278338 ~ 11279265 (+)
G476234 NA other downstream 52403 13984840 ~ 13985259 (+)
G476248 NA other downstream 64647 13997084 ~ 14015564 (+)
G479239 NA other downstream 2426979 16359416 ~ 16359751 (+)
traf1 LOC106585784 other downstream 3046745 16970834 ~ 16982251 (+)
dab2ipa LOC106585786 other downstream 3168549 17016096 ~ 17126012 (+)

Expression


Co-expression Network