G477365


Basic Information

Item Value
gene id G477365
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 14818242 ~ 14819574 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU542635
GCCAAGTCCTATCACATCCCTGCTGCTGTAGGGGGCCTATAGCCAGGGGTTGAAGATGAGCTACTGAGCCATGAGGTGGCAACCAGGAAGGCCTCTTTCACAGCTCCACTGTGTGTGATAACACAGGAGAGACACTGGACATTGAGCattatctccacagaggagacacagacagGCCAGCCAGTTCACATCCGTGCCCATGTACGGGCTCTTATCGTGGTGGTAGAAGAGGAGGCAATGGCGCCTCCTATCTGAAGAAGCTCCATGATATGAATTCTACTCAGCAGGACTagacacctacagtgccttcagaaagttttccacattttgttgtgttacagcctgaaatcaaaatatatatgttttaatcatctacacacaataccctttaatgaccaagtgaaaacatgtttgtagaagtttttgcacatttattgaatgtgaaatacagatatataatttacataagtattcacacctctgagtcaaaactttgtagaagctgagtacagctgtgagtctctttgggtaagtctctaagagctttccacacctggattgtgcaacatttcacattcttttcaaaattattcaagctctgtcaaattggttgctgatcattgctagacaaccattttcttGCCAAAGACAtttaagtagatttaagtcaacactaaggaacattcactgtcttcttggtaagcaactccagcgtagatttggccttgtgttttaggttattgtcctgctgaaaggtgaatacaTTTTTTCTCTCCTGAAAAACACCCCAGTCTAACaaatacaagcatacccataacacgatgaagccaccactatgcttgaaaatatggagagtggtactcagtaatgtgttgtattggatttgccccagacataacactttgttttcaggacaaaaagtgaattgctttaccacattttttgcagtattactttagtgccatgttgcgaacaggatgcatgttttggaatatttgttctgcacaggtttccttcttttcactttatCAAATTGGTTAGTATTgtgATGCAGTTGATCTATTCTCAGTTTtcacctatcacagccattaaactctgttttaaagtcaatattggcctcatggtgaaatccggcaatggagttaggaaggacgcctgtatctttgcagtgactgggtgtattgatacaccatgaaCAAGTGtaattaacttcaccatgctcaaagggatattcaatgttttttttaccatctaccaataggtgcccttctttgcgagtcattggaaaagctccctggtct

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU542635 True 1301 lncRNA 0.41 2 14818242 14819574

Neighbor

gene id symbol gene type direction distance location
LOC110525102 LOC106585759 coding upstream 99509 14706877 ~ 14718733 (+)
LOC110525306 LOC106585757 coding upstream 111387 14691564 ~ 14706855 (+)
gig2p LOC106585755 coding upstream 173648 14641732 ~ 14644594 (+)
LOC110525299 LOC106585791 coding upstream 1085182 13726709 ~ 13733060 (+)
LOC118965067 NA coding upstream 1493447 13322042 ~ 13324795 (+)
LOC110525103 LOC106585761 coding downstream 16569 14836143 ~ 14890175 (+)
LOC110525309 LOC106585763 coding downstream 149916 14969490 ~ 14995677 (+)
LOC110525312 NA coding downstream 907923 15727497 ~ 15730287 (+)
LOC110525007 NA coding downstream 997876 15817450 ~ 15821090 (+)
LOC110525313 LOC106585767 coding downstream 1012926 15832500 ~ 15883790 (+)
G476995 NA non-coding upstream 110993 14674948 ~ 14707249 (+)
G477008 NA non-coding upstream 137669 14677125 ~ 14680573 (+)
G476980 NA non-coding upstream 182013 14636021 ~ 14636229 (+)
G476943 NA non-coding upstream 229982 14570132 ~ 14588260 (+)
G476861 NA non-coding upstream 376875 14439451 ~ 14441367 (+)
G477386 NA non-coding downstream 50076 14869650 ~ 14872190 (+)
G477404 NA non-coding downstream 77937 14897511 ~ 14897949 (+)
G477405 NA non-coding downstream 79540 14899114 ~ 14899315 (+)
G477407 NA non-coding downstream 82614 14902188 ~ 14902584 (+)
G477409 NA non-coding downstream 86560 14906134 ~ 14906437 (+)
G476248 NA other upstream 802678 13997084 ~ 14015564 (+)
G476234 NA other upstream 832983 13984840 ~ 13985259 (+)
G475692 NA other upstream 1504273 13313679 ~ 13313969 (+)
G474949 NA other upstream 2104944 12712306 ~ 12713298 (+)
G474851 NA other upstream 2314123 12503760 ~ 12504119 (+)
G479239 NA other downstream 1539842 16359416 ~ 16359751 (+)
traf1 LOC106585784 other downstream 2159608 16970834 ~ 16982251 (+)
dab2ipa LOC106585786 other downstream 2281412 17016096 ~ 17126012 (+)
G480128 NA other downstream 2501200 17320774 ~ 17321165 (+)
G480219 NA other downstream 2625179 17444753 ~ 17445931 (+)

Expression


Co-expression Network