G477407


Basic Information

Item Value
gene id G477407
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 14902188 ~ 14902584 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU542681
agctgcagcgctttctcggcttcgcgaacttctatcgtcgtttcatccgtaatttcggtcaggtggcagctcctctcacagcccttacttctgtcaagacgtgctttgagtggtccgtttccgcccagggagcttttgatctcctcaagaatcgttttacatctctagacagttcgttgtcgaggttgacgcgtcagaggtgggcgtgggagccattctttctcagcgctccctctctgacgacaaggtccacccatgcgcgtatttttctcatcgcctgtcgccgtcggaacgtaactatgatgtgggtaaccgcgaactgctcgccatccggttagccctaggcgaatggcgacagtggttggaggg

Function

NR:

description
Retrotransposable element Tf2 protein type 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU542681 True 369 lncRNA 0.55 2 14902188 14902584

Neighbor

gene id symbol gene type direction distance location
LOC110525103 LOC106585761 coding upstream 12013 14836143 ~ 14890175 (+)
LOC110525102 LOC106585759 coding upstream 183455 14706877 ~ 14718733 (+)
LOC110525306 LOC106585757 coding upstream 195333 14691564 ~ 14706855 (+)
gig2p LOC106585755 coding upstream 257594 14641732 ~ 14644594 (+)
LOC110525299 LOC106585791 coding upstream 1169128 13726709 ~ 13733060 (+)
LOC110525309 LOC106585763 coding downstream 66906 14969490 ~ 14995677 (+)
LOC110525312 NA coding downstream 824913 15727497 ~ 15730287 (+)
LOC110525007 NA coding downstream 914866 15817450 ~ 15821090 (+)
LOC110525313 LOC106585767 coding downstream 929916 15832500 ~ 15883790 (+)
LOC118964846 NA coding downstream 1265811 16168395 ~ 16175015 (+)
G477405 NA non-coding upstream 2873 14899114 ~ 14899315 (+)
G477404 NA non-coding upstream 4239 14897511 ~ 14897949 (+)
G477386 NA non-coding upstream 29998 14869650 ~ 14872190 (+)
G477365 NA non-coding upstream 82614 14818242 ~ 14819574 (+)
G476995 NA non-coding upstream 194939 14674948 ~ 14707249 (+)
G477409 NA non-coding downstream 3550 14906134 ~ 14906437 (+)
G477549 NA non-coding downstream 95910 14998494 ~ 14998883 (+)
G477552 NA non-coding downstream 98530 15001114 ~ 15073502 (+)
G478144 NA non-coding downstream 536443 15439027 ~ 15439315 (+)
G478370 NA non-coding downstream 699429 15602013 ~ 15602233 (+)
G476248 NA other upstream 886624 13997084 ~ 14015564 (+)
G476234 NA other upstream 916929 13984840 ~ 13985259 (+)
G475692 NA other upstream 1588219 13313679 ~ 13313969 (+)
G474949 NA other upstream 2188890 12712306 ~ 12713298 (+)
G474851 NA other upstream 2398069 12503760 ~ 12504119 (+)
G479239 NA other downstream 1456832 16359416 ~ 16359751 (+)
traf1 LOC106585784 other downstream 2076598 16970834 ~ 16982251 (+)
dab2ipa LOC106585786 other downstream 2198402 17016096 ~ 17126012 (+)
G480128 NA other downstream 2418190 17320774 ~ 17321165 (+)
G480219 NA other downstream 2542169 17444753 ~ 17445931 (+)

Expression


Co-expression Network