XLOC_024128 (b4galnt4a)


Basic Information

Item Value
gene id XLOC_024128
gene name b4galnt4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 24291156 ~ 24610545 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047851
AGGATTCGCAACGTCGCTCCCTGGAAGCGTCATGGATGCTCAGTTGAACGCGGGGATCGAGAGTCGAGCACATCGCAGGACTGGAAGCGGAGCTTGTGGGATTTATTGCTAAACAGTCTCTCTGACTAAAGGCGTGACAACATCAGACTGGATCCGCGTGCAGACTGATCCATCGCATCATCGCCGAAACAAAACGTTTGTTTTGCGGAGCGCACTAGTGGAATCAAAATGTCAGATGCAGCTAGCGGTATTGGAGCTTACAGACGCCAATAGAGCATGTTATTGTTTATATGCTTATGATTTTCTGCTTACTGGGGATAGAGCGGTTGAAGACGTGCGTTTTGTCTACATTTCCGAAAGCAAATAAGTTGCGCGTGCACTTATGGATGGATAGCAGGTGCACGAACGGCTCACCTATAAATGTGATTCTTCACTCGCGGCTGTTCTGATTTCACGAGCCCGGGAAAATAATATCCGAGGATAAAACAGCATGTTTTTCCATTATAGCAGTGCGATAAGACACCAGTCGTGTTATGTTTAAATTGTGTCAAATTCTAAATCAGTGCAGCCACTcgaaatgttaatttaattagaTACAGTAGCGTAAATCTAAagagttttatgtttattttgttttccgtTTTACGTTACGACAGTAACTCATCCCTTTATGGTTACGGCTattttaaagtctaaattattgttattttgtattCAAAGTAATTCCAACGTGACGTATACCATGCTGTGATAAATTCACAACACTTTCTGACCACTTTGAAACTAATGGAGAAACTAAAAgcagaaattattttaaacaaatatgttAGCAGATTGTACAATGCATAATGCTATTCTATGAGTTGTTTTCTATCTAAATATCGTGATTTCTTTAGCTAAGTGTACATCAGTTGTATAGTTCTCATTGGTGATTTGGATACCCAAACAAACTCAAAAATGCACTTAGTTCCTGATCCCAGGAAGTATGGGGTGTGCAGTTTGATTGGGTTGTTTATAGTTAATTAAATGCAAAGTCAGTGTTAAAAGAGACTGGTCATTTGAGCGAAAGCTTTAAATCCAGAGGATGATCTTCTCTGGAGTGGCTGGACTGCTGTCAGAGCGGCTTTCACACGATTAACAGCCCGCTGCTCTTTTCTTTGCCTGTCCGCCCACACTAAAATCATTTACTGGACTATATGCTTTAAAAACTAGTTTGAGGTAAAGAGGATCAAGAATTTTTAACAGTGCAACAGTGGCATGTATTGTAAATCATACATAGCTGTATGATGACTCTAAAACACTTATTTCAGCAAATTAGTGCAAGTTTAGTTACTGAAACCTGTTAAGCTTGAgcgttttgtctttaaaacagatCAAATTGAGAATATAGATGCATCTTTTTTGAAGAGTGCCAAACCAACTGAATTTACAAACTATAAACATGACTTTGAGATACCAGGAACGCTTATAAATTGTGAACAGCAGACAGTACAGCTTTTTGCATCAAGCATTTCTTTACGCCGCTGATGCAAATATGACCTTGTGATATCAGGAATTCAGATGCAGCCGATACCGAAGCTGATGCTGCTGTTGGAAACATGACATTGTGACATCAGGAGTCTGCCTCTAAAGCACCAGACTTGAGGAGCAGCTGACACTCTCTtttttgctgctgctgctgctgatgatgctGCAGCTGCGAAAATGCTGCGATTCCCTGTGAAGAAAATACGAAAACAGTTCAAACTTCTGCTGCTGCTGGTGCTGCTCACTTTTGCAGTATGGTTTACGTACCTGCACATCAACCAGGGCAAATCCATTAAGCTCCATTTCAATTATGGGAAAGATGGTGAGAGGCCGATGGAGGGAACTGACACCAGCCATAAGAGAGACTCACGTTCATCAGACAAGTACCGCAAAAGCGAAGATGCCAGCAACAGCCAGGAGGAGGATAACACACAGGAAGATGAGCCCAACGCCGGCACTGCTCACAACAAAGATCAAGCTGAAATTCGCAAGTTGCTTGCACAGAAGTACAAAAAGTTGCCATGGAAACCAGAGTTTAAAGGTCAAGCGAACCTCCACGTGTTTGAAGACTGGTGTGGCTCCTCAGTCGCTCAGCTCAGGAAGAATCTTCATTTTCCTCTCTACCCCCATACGAGAACTACTGTAAAGAAGTTGGCTGTGGCTCCAAAATGGAAGAACTATGGCCTGAGAATATTTGGATACATTCTACCTTATAAGGATGGTGATTTTCAGTTTGCTGTTTCTTCTGATGATAACTCTGAGTTCTGGTTAAGTTCAGATGAAAGTCCTCTCAACGCCCGACTGCTGGCCTATGTGGGGAAGCTGGGATCTGAGTGGACCGCTCCAGGAGAGTTTACCAAGTTCAGGTCCCAGGCATCCAAGTCTGTGCATCTGATGGCCTCCAGACGATACTACTTTGAGATTCTCCACAAGCAGGACGATAAAGGTTCAGATCATGTGGAGGTTGGGTGGCGCCCTTTCCTGCCAGGACTCAAATATGAGGTCATCGATTCTGCCTACATCTCCTTGTACACAGATGAGAGCAGTTTGAAGATGAACCATGTGGATCACATTCCGCAGACGCTGGCCAGCCACAGTCGTGTTCCTGCAGAGACCCACATCCACAGCCAACACGGCGCCGATATGCTGCAACCGGACCCCCGCGACACCTTTTTCAACATTCCCATGATTGACCCTGCTCATCTTGAAAATGTGCTGCCCGCCTGTCTCTACTCTCCAACATATGTTGTCAAAGACTTCCCTATTGCCCGCTATCAAGGACTACAATTTGTCTATCTTTCTTTTGTCTATCCCAATGATTTTACCCGCCTTACTCACATGGAAAAAGAAAATAAGTGCTTCTACAGAGAGTCACCCATCTATCTGGAGAAGTTTGGCTTCTATAAATATATGAAGATGGATGAAGAGGAAGATGACAGGCCGTTTTTCTTCCCTAATCCTGAtgATTTTCTCGAAGAAGAAGAGGGAGTGGATCCGGATGATGAAGCACAAGTTGTTGGCACCCAGTCAGCAAAGAAAACCATCCAACCTAGCCAGTCAACTCACACCTTAAGCCCTTCAGACAAACCTGTTCCCACAATGCTGGACAGAAAAGAAGTAGAACCAGGGAACCCAGCATTAAGAAGAGAGCAAAGGCGCTTTTTTGCCAGTGCAAGGCAGCCAGTAGTGCCTGAAGCTCAAGAGATGGAAAAAGACACTCCGGACCATCAAATTAATGTAGGGTCACCAAAAAGTGAGAGTGTGGTGAGAGGTCGTTCTCTTGCTTGGGTTCAAAGAGACCGTAGAGAGGGATGGTCGGAAGAACGTTCCCCCAAAATAAGTAGAACAGCTTTGCTGTTTCCACCAAAATCCTCATTGGTTGCCCTTAACAGTCGAGCTAAGCAAATCCTCAGCAACCCAAACCCATCACCAGCCAACAACCATGCTCACGACAACAACCGCAACCCTGGAAACATCCATGCCAACAAAGAACATAAGAAGGAAGACAACAAAATCTACGTCACAAGGCCTCGACCTGCTAGGGAGAAGCAAGGTCTTGTTTCGCGCCATCCCAGAGAGGTCTTCCCTGGTGTTTTCCTCTATCAAAATGGCAAAACAACAAAGTTAGTAAATCTCAGCGCCAAACCAAAACTTGGTAAAGGACCTCTACGGGCATCGCAGCTATTCGCGCGATCTCCTTTGCAAGAATCCAAGGTGTTTCCAGCTAGCCCGAATTTCAGCAACCCAATACCCCCAAATAGAGCAGCAATCCCAAGCCATTTCGAGCGAAGGATAAGGGGCGTCTGGGAGAAACACCAGCATCCTTTGAGGCCTGTCACAACCCTACGCCCCACTCCTCAGTCCTCTAACTCCTCTGAGAATGTGCCGCCAACCGAGTCGGTTCGTGTCACTTCCTATATGCACACCTCACAGATTACAGAGTCCCAACAGCAGCGGCCGGACACAGACCTGGAGCCTGAGGAGGACGGAGGTTTATCAGAGTACAGCTATGAGGACGTGGAACCTCGGCCTGGATGGGCAGAGGAGGCCATAAATTGGCAGAGGACATTTTCTGTCAACAGCATGGATTTTGAATCGTTGCGCTCCGACTGGAATGATCTCCGCTGCAATGTGTCAGGAAACCTGCAGCTGTCTGAAAGTGAAGTGGTGGACGTGCTTGCACAGTACATGGAGAAACTTAACGAACGCAATGGAGGGATCTACACTCTCCTTCGCATCATAAATGTTGAAAAGCGCCGTGACTCTGCGCGGGGAAACCGCTACCTGGTTGAGCTGGAGTTAATGGAGAGAGGCCGGAAGATAGTCCGCCTTTCTGAGTACATCTACATGTTGTTGCACCGTGGACGGGCGGAAGACAGTCTGGAAAATGTTGAAGGGGTAACAGCATCGTCCCCCTCTTCTCCTGTTGCCAGCCCACCTGCTCAACCATCTCACACACCAACTCGTGGGGCCCGCGGCACCCCTCAGTGGGGCACAGTGTATGCAAAACCTCTGCTATGCCAGCCAGTGATGCTGAGGTGGAAAAAAGATGTCATGGTGCATTTTGTAGTGCCAGtcaAGAATCAGGCTCGTTGGGTTCAGCAGTTCATTTCAGACATGGAGTCCCTGCATAGCGAGACAAAGGACAACAATTTCAACATCATCATTGTGGACTTCCAGAGTGAAGACATGGATGTGGAGCAGGCCCTCAGAGAAAGCACTGTTCCACGATATGAGTATCTAAGGAGGGAAGGAAACTTTGAACGTTCTGCCGGCTTACAGATTGGTGTGGATACCATAGAGGACAGTCACAGTATCGTGTTTCTGTGTGACCTGCACATTCATTTCCCTCCTAACATTCTGGAGAACATCAGGAAACACTGTGTTGAGGGCAAACTGGCATTTGCACCTATAGTGATGAGACTAGGCTGTGGGAGCTCACCGCTAGAGCCTGATGGTTACTGGGAGGTAAACGGCTTTGGTTTGTTTGGGATCTACAAGTCAGATTTTGACAAGATTGGTGGAATGAACACAGAGGAGTTTAAGGACCGATGGGGCGGAGAAGACTGGGAACTGCTAGACAGAGTTCTCCAAAACGGTCTGGAGGTTGAGCGCTTAAGACTGAGAAACTTCTTCCACTACTATCACTCCAAAAGAGGCATGTGGAACTCACAGTCTAGTAAGACTCCTAAATGACGAATAACTGGAGCTCACTGAGAGAGATGTCAAAAAGAAACTCAGCTCAAATAACAGGACCTTGAAGGACCAAACCATTGTGTTCTCTGAGACCTCAAGTAGGACATCTCATAAAGGAGGACCAGCTGCTGTCCAAACTCAAAACACTCAAAGAGACTGGCATTCATTGAGTGTATTTGTACGTATCTCTGTCCGTTAAGTCGGGAGTTGGTTTTCGGTGGGTGAAAAACTTGAAAAGATAGTTGAATAATGTAAAGATGGAAACTGTTTTAATGGAAGCTAGCAGCTCGGGTGCGTTCAAATTTGGTTTGCACTTATGATATTACACGCTGAAATGATTGTCTCAAGGTTTTTGATGTGCGCTGGTACTTAGACGTCTGCTTTTTATATTGCTGTAAATGTCACCTCCTGTTGAGGTGTGGCATCTTCTTACACTTGAACTGTAGAAATGATCAGATACGTggacatttttgttttcttttgaaaaatCCTGCTGAATTTGTGGATAAAACTGGACCAAGAATGGTAATGAGATGAAAAGTATACGTCTTTGTAATTGTCTGTACGTCTGCTTCCTTTCCTCAAATCGTTTTCAGAAAAGGTTTATTGGCATACGGATGCGGAAAAACCTTTTCAGACTGCTGTTTTAGTCTGGACTAAGTTTGTACTAGACTCTTCATCTCTATCTCATTGATGCTGTATTCATTTCTACAGTCTTTAAtgatagaaggaaaaacaaaaaaaaaaaacaaacaaacaaacaaaagatgttGTCCAAAATCTGTGTGCCTTTTTTTGACGTATTAAAATTGCAGTAAGACGGAGTTCCTGATGTTTAGCTTTCTGGAATGTGTAACGTTGAGGATATTATTAGCATTGTTTCATGGAGATATATGAATACTAGAAACGTTTATAGAAGAGAAATAACTCCAATATTCTGAATTCTCttgttactttttaatttaaaattgttattattgtttggtCCATTTTTACAAGAATgtatgtcatttatttttgtacatttaccACAGAACATAATTTTGACTCCTTTCCCATTTTGTAGACTTATATACCTTGGTGcccccaccagtgacgatatagagccacattgcactgctacgagtgtgaaat
>TCONS_00047853
agtcaAGAATCAGGCTCGTTGGGTTCAGCAGTTCATTTCAGACATGGAGTCCCTGCATAGCGAGACAAAGGACAACAATTTCAACATCATCATTGTGGACTTCCAGAGTGAAGACATGGATGTGGAGCAGGCCCTCAGAGAAAGCACTGTTCCACGGTACACTTATATACATGCTTGgtaactttgcCTCtcttcttggctgttaaagcgatacttgtggatccaaaTATGAGCATGCCTGAGGTCCAAgatttctccactgtgtctattatggattaccCATGATAACCGCATATTATTCGCACGTAGACTGTAACTGCGACTGTTCTTCCCGCtattgtgacaacaatgtaacatttatgAAAACCACGTGACTGTCTCTGTAGGTTACTGGGAGGTAAACGGCTTTGGTTTGTTTGGGATCTACAAGTCAGATTTTGACAAGATTGGTGGAATGAACACAGAGGAGTTTAAGGACCGATGGGGCGGAGAAGACTGGGAACTGCTAGACAGG

Function

symbol description
b4galnt4a Predicted to enable acetylgalactosaminyltransferase activity. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Orthologous to human B4GALNT4 (beta-1,4-N-acetyl-galactosaminyltransferase 4).

GO:

id name namespace
GO:0032580 Golgi cisterna membrane cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0033842 N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity molecular_function
GO:0008376 acetylgalactosaminyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100422-4 Predicted to enable acetylgalactosaminyltransferase activity. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Orthologous to human B4GALNT4 (beta-1,4-N-acetyl-galactosaminyltransferase 4).

Ensembl:

ensembl_id ENSDARG00000046150

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047851 False 6357 mRNA 0.44 20 24291156 24610545
TCONS_00047853 True 514 nonsense_mediated_decay 0.45 3 24598776 24608014

Neighbor

gene id symbol gene type direction distance location
XLOC_024126 NA coding upstream 19370 24133854 ~ 24271786 (+)
XLOC_024127 tmem86a coding upstream 28706 24250247 ~ 24262450 (+)
XLOC_024125 si:dkeyp-19e1.3 coding upstream 111157 24121611 ~ 24179999 (+)
XLOC_024124 AL954320.1 coding upstream 238929 24051048 ~ 24052227 (+)
XLOC_024123 mrpl23 coding upstream 475207 23777469 ~ 23815949 (+)
XLOC_024130 abtb2b coding downstream 6172 24616717 ~ 24723873 (+)
XLOC_024131 si:ch73-182e20.4 coding downstream 474804 25085349 ~ 25087692 (+)
XLOC_024132 si:dkeyp-93a5.2 coding downstream 482329 25092874 ~ 25095771 (+)
XLOC_024133 ldha coding downstream 512840 25123385 ~ 25131755 (+)
XLOC_024134 ccl35.2 coding downstream 562438 25172983 ~ 25176139 (+)
XLOC_023973 CR762411.1 misc upstream 9073047 15217824 ~ 15218109 (+)
XLOC_024122 NA non-coding upstream 573487 23715365 ~ 23717669 (+)
XLOC_024119 CU024870.1 non-coding upstream 744460 23546579 ~ 23546696 (+)
XLOC_024113 NA non-coding upstream 1025224 23251788 ~ 23265932 (+)
XLOC_024136 BX544877.1 non-coding downstream 596080 25206625 ~ 25206753 (+)
XLOC_024142 NA non-coding downstream 940916 25551461 ~ 25554635 (+)
XLOC_024145 NA non-coding downstream 1142424 25752969 ~ 25761996 (+)
XLOC_024147 CR381664.2 non-coding downstream 1270338 25880883 ~ 25885453 (+)
XLOC_024148 NA non-coding downstream 1358426 25968971 ~ 25970738 (+)

Expression


Co-expression Network