G478560


Basic Information

Item Value
gene id G478560
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 15888094 ~ 15888372 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU543882
TGTAGACCTTTAATCTTTTCAAACATGTCAGGCACTTAACTTCAAATAAGTATGAAACATTTTGCAGTGTTAACTTTCTCTGTATCCCGGTTTGATGTACATTTCAGAGCCTCTTTAGTGTGGATGGGGTATAGCatacattttcaacaacaaagacaGCACTTCCAGTTTCTGTTCTTTACTCTTTTGAACTCTTTTGTCTTCATTCCTAGGAACAGCACATGGAACCACAGTTGGCATGCAAAACATTaaatcaaaacaaaacaaagagtAACACGT

Function

NR:

description
uncharacterized protein LOC110503783

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU543882 True 279 lncRNA 0.36 1 15888094 15888372

Neighbor

gene id symbol gene type direction distance location
LOC110525313 LOC106585767 coding upstream 4304 15832500 ~ 15883790 (+)
LOC110525007 NA coding upstream 67004 15817450 ~ 15821090 (+)
LOC110525312 NA coding upstream 157815 15727497 ~ 15730287 (+)
LOC110525309 LOC106585763 coding upstream 892417 14969490 ~ 14995677 (+)
LOC110525103 LOC106585761 coding upstream 997919 14836143 ~ 14890175 (+)
LOC118964846 NA coding downstream 280023 16168395 ~ 16175015 (+)
LOC110525319 olfm1 coding downstream 749171 16637543 ~ 16654193 (+)
slc2a6 slc2a6 coding downstream 862635 16751007 ~ 16762323 (+)
LOC110525325 LOC106585782 coding downstream 881018 16769390 ~ 16773568 (+)
fibcd1 LOC106585783 coding downstream 958374 16846746 ~ 16966187 (+)
G478514 NA non-coding upstream 4577 15882712 ~ 15883517 (+)
G478430 NA non-coding upstream 211188 15676647 ~ 15676906 (+)
G478424 NA non-coding upstream 215601 15672168 ~ 15672493 (+)
G478375 NA non-coding upstream 275638 15611533 ~ 15612456 (+)
G478742 NA non-coding downstream 44907 15933279 ~ 15991347 (+)
G478794 NA non-coding downstream 119985 16008357 ~ 16011192 (+)
G478821 NA non-coding downstream 160748 16049120 ~ 16049354 (+)
G478823 NA non-coding downstream 161823 16050195 ~ 16050637 (+)
G478825 NA non-coding downstream 163991 16052363 ~ 16052564 (+)
G476248 NA other upstream 1872530 13997084 ~ 14015564 (+)
G476234 NA other upstream 1902835 13984840 ~ 13985259 (+)
G475692 NA other upstream 2574125 13313679 ~ 13313969 (+)
G474949 NA other upstream 3174796 12712306 ~ 12713298 (+)
G474851 NA other upstream 3383975 12503760 ~ 12504119 (+)
G479239 NA other downstream 471044 16359416 ~ 16359751 (+)
traf1 LOC106585784 other downstream 1090810 16970834 ~ 16982251 (+)
dab2ipa LOC106585786 other downstream 1212614 17016096 ~ 17126012 (+)
G480128 NA other downstream 1432402 17320774 ~ 17321165 (+)
G480219 NA other downstream 1556381 17444753 ~ 17445931 (+)

Expression


Co-expression Network