G478821


Basic Information

Item Value
gene id G478821
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 16049120 ~ 16049354 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU544170
actgttttctttgttaccacacggcaagaggtaccggagagccaagtctaggaccaagaggctcctcaacagcttctacccccaagccataagacccaccagacaatttacattgaccaccCCTCCCCTCGCTTTTGTACACTGTTGCTagtcgctgtttattatctatgcatagtcacttcacccccacctacatgtacaaatgattcaactaacctgtacccccacacactga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU544170 True 235 lncRNA 0.48 1 16049120 16049354

Neighbor

gene id symbol gene type direction distance location
LOC110525313 LOC106585767 coding upstream 165330 15832500 ~ 15883790 (+)
LOC110525007 NA coding upstream 228030 15817450 ~ 15821090 (+)
LOC110525312 NA coding upstream 318841 15727497 ~ 15730287 (+)
LOC110525309 LOC106585763 coding upstream 1053443 14969490 ~ 14995677 (+)
LOC110525103 LOC106585761 coding upstream 1158945 14836143 ~ 14890175 (+)
LOC118964846 NA coding downstream 119041 16168395 ~ 16175015 (+)
LOC110525319 olfm1 coding downstream 588189 16637543 ~ 16654193 (+)
slc2a6 slc2a6 coding downstream 701653 16751007 ~ 16762323 (+)
LOC110525325 LOC106585782 coding downstream 720036 16769390 ~ 16773568 (+)
fibcd1 LOC106585783 coding downstream 797392 16846746 ~ 16966187 (+)
G478794 NA non-coding upstream 37928 16008357 ~ 16011192 (+)
G478742 NA non-coding upstream 57773 15933279 ~ 15991347 (+)
G478560 NA non-coding upstream 160748 15888094 ~ 15888372 (+)
G478514 NA non-coding upstream 165603 15882712 ~ 15883517 (+)
G478823 NA non-coding downstream 841 16050195 ~ 16050637 (+)
G478825 NA non-coding downstream 3009 16052363 ~ 16052564 (+)
G478828 NA non-coding downstream 7584 16056938 ~ 16057154 (+)
G478864 NA non-coding downstream 73902 16123256 ~ 16165797 (+)
G478897 NA non-coding downstream 117233 16166587 ~ 16167033 (+)
G476248 NA other upstream 2033556 13997084 ~ 14015564 (+)
G476234 NA other upstream 2063861 13984840 ~ 13985259 (+)
G475692 NA other upstream 2735151 13313679 ~ 13313969 (+)
G474949 NA other upstream 3335822 12712306 ~ 12713298 (+)
G474851 NA other upstream 3545001 12503760 ~ 12504119 (+)
G479239 NA other downstream 310062 16359416 ~ 16359751 (+)
traf1 LOC106585784 other downstream 929828 16970834 ~ 16982251 (+)
dab2ipa LOC106585786 other downstream 1051632 17016096 ~ 17126012 (+)
G480128 NA other downstream 1271420 17320774 ~ 17321165 (+)
G480219 NA other downstream 1395399 17444753 ~ 17445931 (+)

Expression


Co-expression Network