G478864


Basic Information

Item Value
gene id G478864
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 16123256 ~ 16165797 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU544223
tgtgtgtgtctctctctgtgtgtgtgtgtgtgaattgagagagagggggcagaagggagcagagagggagagagatatccAATGATAATCAGCAACGACGTTCTATAAAGGTGTTAGGCTACAATACAATGATATTTTGATGCCAATAACTAAACAAGATGTTTCCACGTTATAATAATTGAGGTTCCAAATGTAAGGTAAAACAATACAATGTGACGTTGTAGTCCTTCATCAGCGCTATTAATTTAGTGATATGTATTATTTACAATGGCTAATTCACTGCGCATAGTCTAGGCCCTATAGCCTACAATCTTTACACGTTCGCTAAAATGTTTAGCATTTCCATCTACGTCCATCTGCACCTGTTCACCTGTGTTGTTGCTGCTCACCTTATATTGTATTGGCCCTATAGAAACATGTCGTTCAGGTGCTCACCGTGTTATTGTATTCGCCCTATAGAAACATGTCGTTCAGGTGCTAACTGGAGAGACCAAATAGTTGGGAAGGCATCCATCCAGCTGCTCAGACAAAACACTTCTTAATCCTAAATTATATGAAACCCAGCCCTGTGCAATTATTACTCACATGGCACGCGGTTCAAATCTGACTGCACTTTAGTTGAATTAAAGTGTCCGTGGTTAGCTTTACATTAACGTTCCCTCAAAGTGACACCAGTTGATTCAACTGACATTTGAAGGCTAACAAAAGGACCCTCCAAGAATGCACCAAGCAAGCAGACTCGATCCAATCATGTAgaatattgtagaatatagttaGAATAATCGATTTGTAAATCAGGGTAGGTTCAGGGTAAACCTACATTTCCTAAATCTATTTCTCTTACAGTTTGGAACGTATGCTACACAGGCCTCAACCACGCATTCGTCTCATCAAACACCCCAACATACAATTTTAACAGTACCAAAGTAGGCTAATCAGGTAATTCAAGTTTCCCAATAGTTCTGACCTAATGTTATCATTCATACTATTTCTCAATTTGAACAGAAGTGTGTTTGTAAACATAAAAGTCAAGCTTTCCACCACCATAGCCTTATGGTGCgtcatacaacatacaacatttGTCATGAAACATAGACTAGCAACTGTGATCCTATACTGTAGGTTTGTGTCATTCTGTCACTTTAAAGAACAGTAATGCCTTGATTACAGTAATGCATTGATTACCGATAGTAAGTCGTTGTTATTTTCCCTCTGAAGAACATATGTCCGTATTAACCGGAACATTTGACAATGTATAACACTGTTTGACATGGTAATAGACGATCACTGTGATATTTTATGATTGTGATATGTAATTAAACTAATTCAAACCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU544223 True 1335 lncRNA 0.38 2 16123256 16165797

Neighbor

gene id symbol gene type direction distance location
LOC110525313 LOC106585767 coding upstream 239466 15832500 ~ 15883790 (+)
LOC110525007 NA coding upstream 302166 15817450 ~ 15821090 (+)
LOC110525312 NA coding upstream 392977 15727497 ~ 15730287 (+)
LOC110525309 LOC106585763 coding upstream 1127579 14969490 ~ 14995677 (+)
LOC110525103 LOC106585761 coding upstream 1233081 14836143 ~ 14890175 (+)
LOC118964846 NA coding downstream 2598 16168395 ~ 16175015 (+)
LOC110525319 olfm1 coding downstream 471746 16637543 ~ 16654193 (+)
slc2a6 slc2a6 coding downstream 585210 16751007 ~ 16762323 (+)
LOC110525325 LOC106585782 coding downstream 603593 16769390 ~ 16773568 (+)
fibcd1 LOC106585783 coding downstream 680949 16846746 ~ 16966187 (+)
G478828 NA non-coding upstream 66102 16056938 ~ 16057154 (+)
G478825 NA non-coding upstream 70692 16052363 ~ 16052564 (+)
G478823 NA non-coding upstream 72619 16050195 ~ 16050637 (+)
G478821 NA non-coding upstream 73902 16049120 ~ 16049354 (+)
G478794 NA non-coding upstream 112064 16008357 ~ 16011192 (+)
G478897 NA non-coding downstream 790 16166587 ~ 16167033 (+)
G478957 NA non-coding downstream 120105 16285902 ~ 16286361 (+)
G479174 NA non-coding downstream 130276 16296073 ~ 16296320 (+)
G479278 NA non-coding downstream 230868 16396665 ~ 16396875 (+)
G479279 LOC107675252 non-coding downstream 231128 16396925 ~ 16397155 (+)
G476248 NA other upstream 2107692 13997084 ~ 14015564 (+)
G476234 NA other upstream 2137997 13984840 ~ 13985259 (+)
G475692 NA other upstream 2809287 13313679 ~ 13313969 (+)
G474949 NA other upstream 3409958 12712306 ~ 12713298 (+)
G474851 NA other upstream 3619137 12503760 ~ 12504119 (+)
G479239 NA other downstream 193619 16359416 ~ 16359751 (+)
traf1 LOC106585784 other downstream 813385 16970834 ~ 16982251 (+)
dab2ipa LOC106585786 other downstream 935189 17016096 ~ 17126012 (+)
G480128 NA other downstream 1154977 17320774 ~ 17321165 (+)
G480219 NA other downstream 1278956 17444753 ~ 17445931 (+)

Expression


Co-expression Network