G479174


Basic Information

Item Value
gene id G479174
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 16296073 ~ 16296320 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU544578
ATTCTATGTTTAAGACCTTAGACTAGTTAGAGCAACTTCACTCAACATAATGTACAGTCAACCAAAGCTTGTAAAAGTTTGACAGGGTACGAAATGATCTACTTACTCTTAGTGTGCCAGCATCCATGTGTGTACCACTGAATATGGAAATCCTGTCTATGTGTGAGCATACACAGTTTGACTGCTTTACATGGTAGACTTTACTGTCTGTGTTGACAGAAAGAAACTGACCACATGAAGTGCTCCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU544578 True 248 lncRNA 0.40 1 16296073 16296320

Neighbor

gene id symbol gene type direction distance location
LOC118964846 NA coding upstream 121058 16168395 ~ 16175015 (+)
LOC110525313 LOC106585767 coding upstream 412283 15832500 ~ 15883790 (+)
LOC110525007 NA coding upstream 474983 15817450 ~ 15821090 (+)
LOC110525312 NA coding upstream 565794 15727497 ~ 15730287 (+)
LOC110525309 LOC106585763 coding upstream 1300396 14969490 ~ 14995677 (+)
LOC110525319 olfm1 coding downstream 341223 16637543 ~ 16654193 (+)
slc2a6 slc2a6 coding downstream 454687 16751007 ~ 16762323 (+)
LOC110525325 LOC106585782 coding downstream 473070 16769390 ~ 16773568 (+)
fibcd1 LOC106585783 coding downstream 550426 16846746 ~ 16966187 (+)
traf1 LOC106585784 coding downstream 674514 16970834 ~ 16982251 (+)
G478957 NA non-coding upstream 9712 16285902 ~ 16286361 (+)
G478897 NA non-coding upstream 129040 16166587 ~ 16167033 (+)
G478864 NA non-coding upstream 130276 16123256 ~ 16165797 (+)
G478828 NA non-coding upstream 238919 16056938 ~ 16057154 (+)
G478825 NA non-coding upstream 243509 16052363 ~ 16052564 (+)
G479278 NA non-coding downstream 100345 16396665 ~ 16396875 (+)
G479279 LOC107675252 non-coding downstream 100605 16396925 ~ 16397155 (+)
G479287 NA non-coding downstream 104666 16400986 ~ 16401188 (+)
G479289 NA non-coding downstream 105927 16402247 ~ 16402492 (+)
G479442 NA non-coding downstream 229300 16525620 ~ 16526550 (+)
G476248 NA other upstream 2280509 13997084 ~ 14015564 (+)
G476234 NA other upstream 2310814 13984840 ~ 13985259 (+)
G475692 NA other upstream 2982104 13313679 ~ 13313969 (+)
G474949 NA other upstream 3582775 12712306 ~ 12713298 (+)
G474851 NA other upstream 3791954 12503760 ~ 12504119 (+)
G479239 NA other downstream 63096 16359416 ~ 16359751 (+)
dab2ipa LOC106585786 other downstream 804666 17016096 ~ 17126012 (+)
G480128 NA other downstream 1024454 17320774 ~ 17321165 (+)
G480219 NA other downstream 1148433 17444753 ~ 17445931 (+)

Expression


Co-expression Network