G479279 (LOC107675252)


Basic Information

Item Value
gene id G479279
gene name LOC107675252
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 16396925 ~ 16397155 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU544699
gttcacctttgatactcacagacattgtgtattggaagagatttctgaatgttcttcgcccagcatacacccctccaaccagacatgctttatctactaatttgctggatgcagagttcaacagagttcaagggAAGGTCAAGCAAATAATAGAGAAAGCAGAGTGTATTGTAATAATTTCTGATGGGTGGtcaaatgttcgtgggcaagggaTAATTAACTACATCGTCT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU544699 True 231 lncRNA 0.41 1 16396925 16397155

Neighbor

gene id symbol gene type direction distance location
LOC118964846 NA coding upstream 221910 16168395 ~ 16175015 (+)
LOC110525313 LOC106585767 coding upstream 513135 15832500 ~ 15883790 (+)
LOC110525007 NA coding upstream 575835 15817450 ~ 15821090 (+)
LOC110525312 NA coding upstream 666646 15727497 ~ 15730287 (+)
LOC110525309 LOC106585763 coding upstream 1401248 14969490 ~ 14995677 (+)
LOC110525319 olfm1 coding downstream 240388 16637543 ~ 16654193 (+)
slc2a6 slc2a6 coding downstream 353852 16751007 ~ 16762323 (+)
LOC110525325 LOC106585782 coding downstream 372235 16769390 ~ 16773568 (+)
fibcd1 LOC106585783 coding downstream 449591 16846746 ~ 16966187 (+)
traf1 LOC106585784 coding downstream 573679 16970834 ~ 16982251 (+)
G479278 NA non-coding upstream 50 16396665 ~ 16396875 (+)
G479174 NA non-coding upstream 100605 16296073 ~ 16296320 (+)
G478957 NA non-coding upstream 110564 16285902 ~ 16286361 (+)
G478897 NA non-coding upstream 229892 16166587 ~ 16167033 (+)
G478864 NA non-coding upstream 231128 16123256 ~ 16165797 (+)
G479287 NA non-coding downstream 3831 16400986 ~ 16401188 (+)
G479289 NA non-coding downstream 5092 16402247 ~ 16402492 (+)
G479442 NA non-coding downstream 128465 16525620 ~ 16526550 (+)
G479474 NA non-coding downstream 192118 16589273 ~ 16593471 (+)
G479543 NA non-coding downstream 214974 16612129 ~ 16612349 (+)
G479239 NA other upstream 37174 16359416 ~ 16359751 (+)
G476248 NA other upstream 2381361 13997084 ~ 14015564 (+)
G476234 NA other upstream 2411666 13984840 ~ 13985259 (+)
G475692 NA other upstream 3082956 13313679 ~ 13313969 (+)
G474949 NA other upstream 3683627 12712306 ~ 12713298 (+)
dab2ipa LOC106585786 other downstream 703831 17016096 ~ 17126012 (+)
G480128 NA other downstream 923619 17320774 ~ 17321165 (+)
G480219 NA other downstream 1047598 17444753 ~ 17445931 (+)
G480062 LOC106585661 other downstream 1320715 17717870 ~ 17718201 (+)

Expression


Co-expression Network