G479474


Basic Information

Item Value
gene id G479474
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 16589273 ~ 16593471 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU544899
CAGCTCAAAGTTATTTTAATtcaagaaatctgttcccaatcATTCCCATGCATTAATAGAGAGGCATAGGCCTATGTGATCACATCCAAATTGAATCAAGGTTTGAAATAAttatgtttttgtcaaatactattctatactattcttaTATACTATTCTTATATATTCtaatattatatactattcttGCGCTCAAGGAAAAATCTGCCCACGGCTCAATGAAATTGGGGACCctggtatagggaatagggttgcaTCTCTTCACCCTCTCGCAGACCTGCCTGACCATCATTAATGCGGAAATCACGTAGGAACGGGACTCCACACACAAGCTGACTCAGAGTGACATGTGGCATCATTCATAATTGAGCTGCACTCCGCCAGCCACGACTCCACTCATTAGGTTAGTATGTGCAGTATGTAGAACATGCATGTCTGACAGTCAGCCAGAAGAGAACTTCAGTTGGGAtattattttaaaatatttttcacTTTTCCTTATTAATGAAGGCATGTTAAGTCCTCTGATTCCTCCGTTTTTTTTTGGCCTATGGTTTTGATGGCATCAGGAAAGAATGGATGGATTCAAGATGAGACAGGCAGCGTGTGAGGAAATGGATGAGAGTGCAAAGCTTTTTCCTATACTGTGTAGAAGAggctctcccacctctctccccttttctcctccccccacgtctctctctcactcacctctctctctctcggtttttCCCATTGAAACCTGATTTGCCAGACAAaagaaaaaactaaaacaaaagagagaaaagcCAAAGACAAGCTCATTTTAGACATTTGTATGCATTTAGAAGACCTTTCTGAAGAGGAAAATTTTACTTTTTAACATCAAATCCGTATCAAGGAACTCAAGAGGTTGTCTTCTTGTTAACCtaagttgtcaatttgttttaaACAATGCATTAACCCATAATTTCAACAATGCATCCTCCTAATTTCACTGTTGCATCCCATCTGCTACGGAATATCAGGAACTGATACTATGTTTAATACATACTGTACAGCTCAGGCTTTCAAAATACTTTTCAGAATTTAAAGCTGTCCCACTGTTTTtcgggagcttcgtgaaatgggtttccatagccgagcagccgcacacaagcataCGATCAGAGtggtgtggtgtaaagcttgccgccattgggctctggagcagtggaaacgcgttctctggaatgatgaataactcttcaccatctggcagtccgacggacaaatctgggtttggtagatgccaggagaactctacctgcctgaatgcatagtgccaactgtaaagtttgatggaggaggaataatggtctggggctcttaacgctacagcatacaatgacattctagacgattctgtgcctgcaactttgtggcaacagtttgtggaaggccatttcctgtttcctgtttcaacatgactaTCCCCCTgtccacaaagcgaggtccatacagaaatggtttgtgaagatcggtgtgaaagaacttgactagcctgcacaaagccctgacctcaaccacatcaaacaccttAGAGATTAATtagaatgccgactgcgagccaggcctaatcgcccaacatcagggctttacctcactaatgctcttgtggctgaatggaagaaattccctgcagcaatgttacaacatcttgtggaaagccttcccagagattggaggctgttatagcagcaaaggggggacaaactccatagTAATGCTACACTGCCGCCTATTGgggcggcagtgtagcctagtggttagagcgttgggctagtaaccggttgcaagttcaaatccccgagctgacaaggtacaaatctgtcgttctacccctgaacaggcagttaacccactgttcctaggccgtcattgaaaataagaatttgttcttaactgacttgcctggttaaataaaggtaaaaaataaaaataattttggacaagcaggtgtccacatacttttggtcatgtagtgtatgtcaaACAATTAGAAGATGCTGCCCTCTAGTGGAGACACAGAGCAGTGGAGACACAGCATACCTGGCTTACTGGCTGACCAAACAGGCCAACATcttaaacaataaaaattaacaacATCAGACATCTCCCAATCTCCATTCCATTCTGtctaccccaccccacccctaccCCATGACCCCTCCCCCCCAACATATGATCCACATCATTACTGACACCTATTCACCACAAAAACACTTAATTGGCTAGCTACCTTCATAATCTCATTTTAGCCTTGTAAGGGAAATAACAATATTCACAGGCTTGCCGATCGTTAAACATTCTATCGTCATCCACTATTTTTCTGTGCAGGTGCCTGCCTCTCATTGATCATTCTCCTCCAATGGCTTTTCTCTAGGACAATGGTTTCCAACCTTTTTTGGTTACCGTACCACCAACCAAATGTTGCTCTGCTCTGGAGTACCTCTGAAGtacattttaccagtaggcctactgtctaatgagtcttctcaagtacacCCTGTGGATAGCCAAGTACCCCCAGGAGTCTTAGttcccctggttggaaaccactgatcTAGGGCACAGCCACAGGATTGACCAGTAGGGCAGAAGTGGGCCCTAGTCAGTGTGATTCTGCTCAGCGACTATCTCTCACAATTGCAGCCAGAGTATGAGCAGCAGTGTAGCAACCGAGCACAGCCAGTGTAATGTCGTTCTGCTCCAGTCGGGGGTGTTGTTGCAGAGGTCTGAGCCACAGCAATGGATCAGCACCCCAGGTAGCTCCTGTTGTTGGCAGTGTCGAGACGTGGCACAACCACTGGTCAGCATGATGCCCAGGGCACCTGCAGTGATAAcacgcTGCTCTCTGTCCTAATGCAGAAGCGGTGCTTGAAGCCTTTGTGGGAGTGGGAGCAAGTGATGACCTCTGGGCTGGAGCAGCCCACGTCCACATACTTCTGGCCCTGGAGGATGTTACAGCCATAGCACTGCAGCGCCTCGCCTTCCACAACACATAAGGAACATTAGCACAACATTGTAATAACATGCTGCAAGAAAATGATCCTGAGTTCAGCAAGGATAACACTATCAATCCCCTTGTGAGAATATTCCAATTCATGGACTTCATGTTGCCTCACTCCTGTGTTGAATGTTTTATGACTCCAAACTGGACTGGGCTTCCCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU544899 True 3192 lncRNA 0.45 2 16589273 16593471
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118964846 NA coding upstream 414258 16168395 ~ 16175015 (+)
LOC110525313 LOC106585767 coding upstream 705483 15832500 ~ 15883790 (+)
LOC110525007 NA coding upstream 768183 15817450 ~ 15821090 (+)
LOC110525312 NA coding upstream 858994 15727497 ~ 15730287 (+)
LOC110525309 LOC106585763 coding upstream 1593596 14969490 ~ 14995677 (+)
LOC110525319 olfm1 coding downstream 44072 16637543 ~ 16654193 (+)
slc2a6 slc2a6 coding downstream 157536 16751007 ~ 16762323 (+)
LOC110525325 LOC106585782 coding downstream 175919 16769390 ~ 16773568 (+)
fibcd1 LOC106585783 coding downstream 253275 16846746 ~ 16966187 (+)
traf1 LOC106585784 coding downstream 377363 16970834 ~ 16982251 (+)
G479442 NA non-coding upstream 62723 16525620 ~ 16526550 (+)
G479289 NA non-coding upstream 186781 16402247 ~ 16402492 (+)
G479287 NA non-coding upstream 188085 16400986 ~ 16401188 (+)
G479279 LOC107675252 non-coding upstream 192118 16396925 ~ 16397155 (+)
G479278 NA non-coding upstream 192398 16396665 ~ 16396875 (+)
G479543 NA non-coding downstream 18658 16612129 ~ 16612349 (+)
G479548 NA non-coding downstream 21620 16615091 ~ 16615495 (+)
G479562 NA non-coding downstream 34035 16627506 ~ 16627931 (+)
G479564 NA non-coding downstream 35572 16629043 ~ 16651923 (+)
G479609 NA non-coding downstream 100980 16694451 ~ 16697287 (+)
G479239 NA other upstream 229522 16359416 ~ 16359751 (+)
G476248 NA other upstream 2573709 13997084 ~ 14015564 (+)
G476234 NA other upstream 2604014 13984840 ~ 13985259 (+)
G475692 NA other upstream 3275304 13313679 ~ 13313969 (+)
G474949 NA other upstream 3875975 12712306 ~ 12713298 (+)
dab2ipa LOC106585786 other downstream 507515 17016096 ~ 17126012 (+)
G480128 NA other downstream 727303 17320774 ~ 17321165 (+)
G480219 NA other downstream 851282 17444753 ~ 17445931 (+)
G480062 LOC106585661 other downstream 1124399 17717870 ~ 17718201 (+)

Expression

G479474 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
End of interactive chart.

G479474 Expression in each Bioproject

Bar chart with 17 bars.
G479474 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 4.
End of interactive chart.

Co-expression Network