G479548


Basic Information

Item Value
gene id G479548
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 16615091 ~ 16615495 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU544978
caataaaactggccttctttcgactagttgagtatctggagcatcagcatttgtgggttcgattacaggctcaaaatggccagaaacaaagaactttcttctgaaactcgtcagtctattcttgttctgagaaactaAGGCTATTAcatgcgagaaattgtcaagaaactgaagatattgtacaacactgtgtactactcccttcacagaacagcgcaaactggctctaaccagaacagaaagaggagtgggaggccccggtgcacaactgagcaagaagccAAGTAGattaaagtgtctagtttgagaaatagacgcctcacaagtcctcaactggcagcttcattaaatagtacctgcaaaacaccagtttcaacgtcaacagtgaagaggtgactccgggat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU544978 True 405 lncRNA 0.43 1 16615091 16615495

Neighbor

gene id symbol gene type direction distance location
LOC118964846 NA coding upstream 440076 16168395 ~ 16175015 (+)
LOC110525313 LOC106585767 coding upstream 731301 15832500 ~ 15883790 (+)
LOC110525007 NA coding upstream 794001 15817450 ~ 15821090 (+)
LOC110525312 NA coding upstream 884812 15727497 ~ 15730287 (+)
LOC110525309 LOC106585763 coding upstream 1619414 14969490 ~ 14995677 (+)
LOC110525319 olfm1 coding downstream 22048 16637543 ~ 16654193 (+)
slc2a6 slc2a6 coding downstream 135512 16751007 ~ 16762323 (+)
LOC110525325 LOC106585782 coding downstream 153895 16769390 ~ 16773568 (+)
fibcd1 LOC106585783 coding downstream 231251 16846746 ~ 16966187 (+)
traf1 LOC106585784 coding downstream 355339 16970834 ~ 16982251 (+)
G479543 NA non-coding upstream 2742 16612129 ~ 16612349 (+)
G479474 NA non-coding upstream 21620 16589273 ~ 16593471 (+)
G479442 NA non-coding upstream 88541 16525620 ~ 16526550 (+)
G479289 NA non-coding upstream 212599 16402247 ~ 16402492 (+)
G479287 NA non-coding upstream 213903 16400986 ~ 16401188 (+)
G479562 NA non-coding downstream 12011 16627506 ~ 16627931 (+)
G479564 NA non-coding downstream 13548 16629043 ~ 16651923 (+)
G479609 NA non-coding downstream 78956 16694451 ~ 16697287 (+)
G479678 NA non-coding downstream 114845 16730340 ~ 16730792 (+)
G479841 NA non-coding downstream 245850 16861345 ~ 16863923 (+)
G479239 NA other upstream 255340 16359416 ~ 16359751 (+)
G476248 NA other upstream 2599527 13997084 ~ 14015564 (+)
G476234 NA other upstream 2629832 13984840 ~ 13985259 (+)
G475692 NA other upstream 3301122 13313679 ~ 13313969 (+)
G474949 NA other upstream 3901793 12712306 ~ 12713298 (+)
dab2ipa LOC106585786 other downstream 485491 17016096 ~ 17126012 (+)
G480128 NA other downstream 705279 17320774 ~ 17321165 (+)
G480219 NA other downstream 829258 17444753 ~ 17445931 (+)
G480062 LOC106585661 other downstream 1102375 17717870 ~ 17718201 (+)

Expression


Co-expression Network