G479896


Basic Information

Item Value
gene id G479896
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 16966366 ~ 16966702 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU545378
ctttatttaactaggcaagtcagttaagaacaaattcttatttacaatgacggcctaccccggccaaacctggaagacgctggaccaattgtgtgacgccctatgggactcccaatcacatccagatctgatacaacctggattcaaaccaggactTGCACttagatgcagtgccctagaccgctgccccactcgggagcccaagtgGTGATAAGAAAGACATTGAACAAAACATTCTCAATAAGAGACTACTGTCAGTTTGTAATTTTGGGGAGGTACAAAAATATGTTTATTCTACATAAATAGGCTGCTATAATATATTAGAAATACAATATCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU545378 True 337 lncRNA 0.42 1 16966366 16966702

Neighbor

gene id symbol gene type direction distance location
fibcd1 LOC106585783 coding upstream 179 16846746 ~ 16966187 (+)
LOC110525325 LOC106585782 coding upstream 192798 16769390 ~ 16773568 (+)
slc2a6 slc2a6 coding upstream 204043 16751007 ~ 16762323 (+)
LOC110525319 olfm1 coding upstream 312173 16637543 ~ 16654193 (+)
LOC118964846 NA coding upstream 791351 16168395 ~ 16175015 (+)
traf1 LOC106585784 coding downstream 4132 16970834 ~ 16982251 (+)
phf19 LOC106585785 coding downstream 17114 16983816 ~ 17003233 (+)
dab2ipa LOC106585786 coding downstream 49394 17016096 ~ 17126012 (+)
LOC118964847 NA coding downstream 160253 17126955 ~ 17131300 (+)
med27 med27 coding downstream 258863 17225565 ~ 17318854 (+)
G479841 NA non-coding upstream 102443 16861345 ~ 16863923 (+)
G479678 NA non-coding upstream 235574 16730340 ~ 16730792 (+)
G479609 NA non-coding upstream 269079 16694451 ~ 16697287 (+)
G479564 NA non-coding upstream 314443 16629043 ~ 16651923 (+)
G479562 NA non-coding upstream 338435 16627506 ~ 16627931 (+)
G479897 NA non-coding downstream 38 16966740 ~ 16966978 (+)
G479823 NA non-coding downstream 2867 16969569 ~ 16970392 (+)
G479966 NA non-coding downstream 131262 17097964 ~ 17098959 (+)
G480058 NA non-coding downstream 352348 17319050 ~ 17319198 (+)
G480126 NA non-coding downstream 353333 17320035 ~ 17320254 (+)
G479239 NA other upstream 606615 16359416 ~ 16359751 (+)
G476248 NA other upstream 2950802 13997084 ~ 14015564 (+)
G476234 NA other upstream 2981107 13984840 ~ 13985259 (+)
G475692 NA other upstream 3652397 13313679 ~ 13313969 (+)
G474949 NA other upstream 4253068 12712306 ~ 12713298 (+)
G480128 NA other downstream 354072 17320774 ~ 17321165 (+)
G480219 NA other downstream 478051 17444753 ~ 17445931 (+)
G480062 LOC106585661 other downstream 751168 17717870 ~ 17718201 (+)

Expression


Co-expression Network