G479897


Basic Information

Item Value
gene id G479897
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 16966740 ~ 16966978 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU545379
CTGGAACCTCTAGTGGTGATCTGTTGAACTGCATCCTTATCCAAGACCCTAATAGCCCTAACCCACCATCCGTGGAAGTTACTAAGGCGTGAAATTGTGCATGTCCTTCAATATAACTCCCCCTTAGGAAGATGACTGACTTCTGCTGTTCTCATCGTTTTTCCCCTAAATGCACAATGTCCATCACCGTTCCCTTTCGGTTCATTTTTCTTTTTGTTTATGAACCAAAAAATAGgcag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU545379 True 239 lncRNA 0.43 1 16966740 16966978

Neighbor

gene id symbol gene type direction distance location
fibcd1 LOC106585783 coding upstream 553 16846746 ~ 16966187 (+)
LOC110525325 LOC106585782 coding upstream 193172 16769390 ~ 16773568 (+)
slc2a6 slc2a6 coding upstream 204417 16751007 ~ 16762323 (+)
LOC110525319 olfm1 coding upstream 312547 16637543 ~ 16654193 (+)
LOC118964846 NA coding upstream 791725 16168395 ~ 16175015 (+)
traf1 LOC106585784 coding downstream 3856 16970834 ~ 16982251 (+)
phf19 LOC106585785 coding downstream 16838 16983816 ~ 17003233 (+)
dab2ipa LOC106585786 coding downstream 49118 17016096 ~ 17126012 (+)
LOC118964847 NA coding downstream 159977 17126955 ~ 17131300 (+)
med27 med27 coding downstream 258587 17225565 ~ 17318854 (+)
G479896 NA non-coding upstream 38 16966366 ~ 16966702 (+)
G479841 NA non-coding upstream 102817 16861345 ~ 16863923 (+)
G479678 NA non-coding upstream 235948 16730340 ~ 16730792 (+)
G479609 NA non-coding upstream 269453 16694451 ~ 16697287 (+)
G479564 NA non-coding upstream 314817 16629043 ~ 16651923 (+)
G479823 NA non-coding downstream 2591 16969569 ~ 16970392 (+)
G479966 NA non-coding downstream 130986 17097964 ~ 17098959 (+)
G480058 NA non-coding downstream 352072 17319050 ~ 17319198 (+)
G480126 NA non-coding downstream 353057 17320035 ~ 17320254 (+)
G480134 NA non-coding downstream 356727 17323705 ~ 17323942 (+)
G479239 NA other upstream 606989 16359416 ~ 16359751 (+)
G476248 NA other upstream 2951176 13997084 ~ 14015564 (+)
G476234 NA other upstream 2981481 13984840 ~ 13985259 (+)
G475692 NA other upstream 3652771 13313679 ~ 13313969 (+)
G474949 NA other upstream 4253442 12712306 ~ 12713298 (+)
G480128 NA other downstream 353796 17320774 ~ 17321165 (+)
G480219 NA other downstream 477775 17444753 ~ 17445931 (+)
G480062 LOC106585661 other downstream 750892 17717870 ~ 17718201 (+)

Expression


Co-expression Network