G480220


Basic Information

Item Value
gene id G480220
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 17448569 ~ 17449504 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU545734
ACAGATCTAAATGGAAGTGGTTGGTGGAATCCATTCTCACATCATGTGGGGAGCAGGTGTTAATGTGAAGCCTGGTCTGTAGAGCCATAACCTCTGCCTCAGTCCGGAACAACTGGACCTGCAGCTCATCACAGCGCTCACCCAGCTCCCGAATCTGCTTCCGGTACTGGTCCTTCTCCTGGAGGCTCCGTGAATTCTCCTGGTGGTACTCCTCTCGAGAGGCGATGGCCTACCGCAAAACAAAAGCTTTGGTTTGCTTTGCTGTAATGGTTTATATGAAACAAATGGAAATGGTGCGGGTGAGCTTCTGATCACAACCACACAGATAGTCAACTCTTTCATTTTTAGCAAATAGAAGTCACCTCTTCTGGATGAAAGAAATAAGCAGTATGGGGTGAATCCTAACCTTCACTGATGATGAATTTTCACTTTGATGTAATTTGGAGACTAAGTAAAGGGGAAGATAGGATTTCCCAAGACAGTGAGGTCGAAGAATCACAGTCCTAAAATCACACCATGATCACcttgtctctctccctgataACCTCATCCATCTGTTTCAGGATGTCCTCCATTCGGTCACGATACATTTTTGCATCTTTCTTTAATGTTGTGCACTTCAACTCAAGAACCTCCTTCGCCTCCAAGTACTGCAAGAACAAATTAAACCTATACATTACAATTGGAACACCATAACTTGTGACATTGGAAGAGACAACTTGAACAATTTAACTTTGCACAATCAGCTATTCCAATGAATGAGGAACACGCTTGGGCAGATTACAAAAATAAGGAAATATATTCATCCTGATGCTCAAGATCATCATTTTTGAGGAAATAATATAATTTGTTTGGAATTTTTTTGTTCCTCTTGCACTTGTGTTGAAAGAGCAGTTGAATAGCTTATATTTTAGAAATTCAAGGTAATTAGTAGTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU545734 True 936 lncRNA 0.41 1 17448569 17449504

Neighbor

gene id symbol gene type direction distance location
LOC110525335 LOC106585645 coding upstream 35713 17360752 ~ 17412856 (+)
med27 med27 coding upstream 129715 17225565 ~ 17318854 (+)
LOC118964847 NA coding upstream 317269 17126955 ~ 17131300 (+)
dab2ipa LOC106585786 coding upstream 322557 17016096 ~ 17126012 (+)
phf19 LOC106585785 coding upstream 445336 16983816 ~ 17003233 (+)
LOC110525341 LOC106585648 coding downstream 39084 17488588 ~ 17496137 (+)
LOC110525345 NA coding downstream 76794 17526298 ~ 17534335 (+)
LOC110525350 LOC106585656 coding downstream 187464 17636968 ~ 17643111 (+)
LOC110525352 LOC106585658 coding downstream 207562 17657066 ~ 17715306 (+)
LOC118964848 NA coding downstream 270005 17719509 ~ 17721149 (+)
G480178 NA non-coding upstream 64512 17383704 ~ 17384057 (+)
G480139 NA non-coding upstream 119597 17328751 ~ 17328972 (+)
G480138 NA non-coding upstream 119851 17328518 ~ 17328718 (+)
G480134 NA non-coding upstream 124627 17323705 ~ 17323942 (+)
G480126 NA non-coding upstream 128315 17320035 ~ 17320254 (+)
G480221 NA non-coding downstream 56 17449560 ~ 17449847 (+)
G480223 LOC106585631 non-coding downstream 1174 17450678 ~ 17451003 (+)
G480224 NA non-coding downstream 2079 17451583 ~ 17452081 (+)
G480230 LOC106585647 non-coding downstream 15030 17464534 ~ 17465153 (+)
G480244 LOC106585650 non-coding downstream 30011 17479515 ~ 17480834 (+)
G480219 NA other upstream 2638 17444753 ~ 17445931 (+)
G480128 NA other upstream 127404 17320774 ~ 17321165 (+)
traf1 LOC106585784 other upstream 466349 16970834 ~ 16982251 (+)
G479239 NA other upstream 1088818 16359416 ~ 16359751 (+)
G480062 LOC106585661 other downstream 268366 17717870 ~ 17718201 (+)
LOC110525363 LOC106585667 other downstream 465256 17914750 ~ 17980989 (+)
G481201 NA other downstream 835293 18284797 ~ 18285312 (+)
G481205 NA other downstream 840729 18290233 ~ 18290467 (+)
G481159 NA other downstream 885828 18335332 ~ 18340566 (+)

Expression


Co-expression Network