Gene
RNA
| Item | Value |
|---|---|
| gene id | G480221 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 17449560 ~ 17449847 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| caspase recruitment domain-containing protein 9-like isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU545735 | True | 288 | lncRNA | 0.48 | 1 | 17449560 | 17449847 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110525335 | LOC106585645 | coding | upstream | 36704 | 17360752 ~ 17412856 (+) |
| med27 | med27 | coding | upstream | 130706 | 17225565 ~ 17318854 (+) |
| LOC118964847 | NA | coding | upstream | 318260 | 17126955 ~ 17131300 (+) |
| dab2ipa | LOC106585786 | coding | upstream | 323548 | 17016096 ~ 17126012 (+) |
| phf19 | LOC106585785 | coding | upstream | 446327 | 16983816 ~ 17003233 (+) |
| LOC110525341 | LOC106585648 | coding | downstream | 38741 | 17488588 ~ 17496137 (+) |
| LOC110525345 | NA | coding | downstream | 76451 | 17526298 ~ 17534335 (+) |
| LOC110525350 | LOC106585656 | coding | downstream | 187121 | 17636968 ~ 17643111 (+) |
| LOC110525352 | LOC106585658 | coding | downstream | 207219 | 17657066 ~ 17715306 (+) |
| LOC118964848 | NA | coding | downstream | 269662 | 17719509 ~ 17721149 (+) |
| G480220 | NA | non-coding | upstream | 56 | 17448569 ~ 17449504 (+) |
| G480178 | NA | non-coding | upstream | 65503 | 17383704 ~ 17384057 (+) |
| G480139 | NA | non-coding | upstream | 120588 | 17328751 ~ 17328972 (+) |
| G480138 | NA | non-coding | upstream | 120842 | 17328518 ~ 17328718 (+) |
| G480134 | NA | non-coding | upstream | 125618 | 17323705 ~ 17323942 (+) |
| G480223 | LOC106585631 | non-coding | downstream | 831 | 17450678 ~ 17451003 (+) |
| G480224 | NA | non-coding | downstream | 1736 | 17451583 ~ 17452081 (+) |
| G480230 | LOC106585647 | non-coding | downstream | 14687 | 17464534 ~ 17465153 (+) |
| G480244 | LOC106585650 | non-coding | downstream | 29668 | 17479515 ~ 17480834 (+) |
| G480219 | NA | other | upstream | 3629 | 17444753 ~ 17445931 (+) |
| G480128 | NA | other | upstream | 128395 | 17320774 ~ 17321165 (+) |
| traf1 | LOC106585784 | other | upstream | 467340 | 16970834 ~ 16982251 (+) |
| G479239 | NA | other | upstream | 1089809 | 16359416 ~ 16359751 (+) |
| G480062 | LOC106585661 | other | downstream | 268023 | 17717870 ~ 17718201 (+) |
| LOC110525363 | LOC106585667 | other | downstream | 464913 | 17914750 ~ 17980989 (+) |
| G481201 | NA | other | downstream | 834950 | 18284797 ~ 18285312 (+) |
| G481205 | NA | other | downstream | 840386 | 18290233 ~ 18290467 (+) |
| G481159 | NA | other | downstream | 885485 | 18335332 ~ 18340566 (+) |
