Gene
RNA
| Item | Value |
|---|---|
| gene id | G480230 |
| gene name | LOC106585647 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 17464534 ~ 17465153 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| snRNA-activating protein complex subunit 4-like isoform X3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU545744 | True | 516 | lncRNA | 0.52 | 2 | 17464534 | 17465153 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110525335 | LOC106585645 | coding | upstream | 51678 | 17360752 ~ 17412856 (+) |
| med27 | med27 | coding | upstream | 145680 | 17225565 ~ 17318854 (+) |
| LOC118964847 | NA | coding | upstream | 333234 | 17126955 ~ 17131300 (+) |
| dab2ipa | LOC106585786 | coding | upstream | 338522 | 17016096 ~ 17126012 (+) |
| phf19 | LOC106585785 | coding | upstream | 461301 | 16983816 ~ 17003233 (+) |
| LOC110525341 | LOC106585648 | coding | downstream | 23435 | 17488588 ~ 17496137 (+) |
| LOC110525345 | NA | coding | downstream | 61145 | 17526298 ~ 17534335 (+) |
| LOC110525350 | LOC106585656 | coding | downstream | 171815 | 17636968 ~ 17643111 (+) |
| LOC110525352 | LOC106585658 | coding | downstream | 191913 | 17657066 ~ 17715306 (+) |
| LOC118964848 | NA | coding | downstream | 254356 | 17719509 ~ 17721149 (+) |
| G480224 | NA | non-coding | upstream | 12453 | 17451583 ~ 17452081 (+) |
| G480223 | LOC106585631 | non-coding | upstream | 13531 | 17450678 ~ 17451003 (+) |
| G480221 | NA | non-coding | upstream | 14687 | 17449560 ~ 17449847 (+) |
| G480220 | NA | non-coding | upstream | 15030 | 17448569 ~ 17449504 (+) |
| G480178 | NA | non-coding | upstream | 80477 | 17383704 ~ 17384057 (+) |
| G480244 | LOC106585650 | non-coding | downstream | 14362 | 17479515 ~ 17480834 (+) |
| G480218 | NA | non-coding | downstream | 31804 | 17496957 ~ 17497499 (+) |
| G480250 | NA | non-coding | downstream | 34208 | 17499361 ~ 17499802 (+) |
| G480304 | NA | non-coding | downstream | 114690 | 17579843 ~ 17580044 (+) |
| G480219 | NA | other | upstream | 18603 | 17444753 ~ 17445931 (+) |
| G480128 | NA | other | upstream | 143369 | 17320774 ~ 17321165 (+) |
| traf1 | LOC106585784 | other | upstream | 482314 | 16970834 ~ 16982251 (+) |
| G479239 | NA | other | upstream | 1104783 | 16359416 ~ 16359751 (+) |
| G480062 | LOC106585661 | other | downstream | 252717 | 17717870 ~ 17718201 (+) |
| LOC110525363 | LOC106585667 | other | downstream | 449607 | 17914750 ~ 17980989 (+) |
| G481201 | NA | other | downstream | 819644 | 18284797 ~ 18285312 (+) |
| G481205 | NA | other | downstream | 825080 | 18290233 ~ 18290467 (+) |
| G481159 | NA | other | downstream | 870179 | 18335332 ~ 18340566 (+) |
