G480244 (LOC106585650)


Basic Information

Item Value
gene id G480244
gene name LOC106585650
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 17479515 ~ 17480834 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU545758
tatttagacagggagtcgaTGCTAAAACCAAAGTCTATTTTCTAGATTAGTCCCGTTTAGCACAATACACACATTAAACTACACATACACATTAGACTAGAGGGAGTGGGGTTATGGGTTGAGATTATGTACACGGTGGTGGCTGGTGGGATCATCATAACTATTATCCAATCAGAACCCCAAAAAATGCTACATACAGTATTCATGACATTCATGAATACCAATGAAATGAATGCCAAATGTCCACTTGACCTAGTATAATAATGTATTTACATATTATTTAATACTGTAATACAAGTACAATTAACAACTATCAAATACACTCATTACTAACCAGACTGACAGTCTTAGCAAAAGTGGATACAATACAATTTCTGGTTAAAAAAATGTGGTGGTATCAGCAGTTGGAAAGCAAGCAATTAACTGACAAGTAGCTACAGGAAGTCTCCTGATAATTCCTACTACAAATAGTAGGACTACGTTCAAGCAAAGATTGTGGAACATATGCAGTGTAAAATGTGTAAACAATGCTCACAAAATAATACACAAACAACTTTGAGTCACAGTCATATTTGCCTCAGCTTTAAATACAGCTGTTAGCATATTGTTTTCAAATGGCCTGTTAAAGTGGTTCAAAACTAAACATTTTATGAAGTACAAGTAAAAAAAGCAATATCTCTTATTTTGTCACAAATCAGTGCACACACTACAACTTTAGATTATCTGTGAGTGTTGAGTGACAATGACACGCCATAATTGTTTTCCAGTTTCTTGATGGATGGTCCTAGATCTAAATTCTATAGCCTCCTTAAACTCCATCAGCCTTCATTGTGAATCTCAGATATGTTGTCAATAGACTGCAGCAGTTGAGATACCAGACAAAGAGTTTCTGCTCCTGTAAGTAATTGCTTGATGGAAGTCTCAGCATTGAGTGCTGCTTTGTTAAGGTACTCCGAGGCCACTTGCGTGTTATGTTTCATTGTATTTAAGGCAGCTGTCTCTCTAGCTCGAAGTCTCTCATTCTCATACCGGCACCCCTCTACTTGGCCCTGCAATATAAAGAGTATCACATCATGCAACAgtgtttcctctaggatttttttcAGCAGTGGTGGCAAGGGTTGTGctacta

Function

NR:

description
PREDICTED: serologically defined colon cancer antigen 3 homolog isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU545758 True 1132 lncRNA 0.37 2 17479515 17480834

Neighbor

gene id symbol gene type direction distance location
LOC110525335 LOC106585645 coding upstream 66659 17360752 ~ 17412856 (+)
med27 med27 coding upstream 160661 17225565 ~ 17318854 (+)
LOC118964847 NA coding upstream 348215 17126955 ~ 17131300 (+)
dab2ipa LOC106585786 coding upstream 353503 17016096 ~ 17126012 (+)
phf19 LOC106585785 coding upstream 476282 16983816 ~ 17003233 (+)
LOC110525341 LOC106585648 coding downstream 7754 17488588 ~ 17496137 (+)
LOC110525345 NA coding downstream 45464 17526298 ~ 17534335 (+)
LOC110525350 LOC106585656 coding downstream 156134 17636968 ~ 17643111 (+)
LOC110525352 LOC106585658 coding downstream 176232 17657066 ~ 17715306 (+)
LOC118964848 NA coding downstream 238675 17719509 ~ 17721149 (+)
G480230 LOC106585647 non-coding upstream 14362 17464534 ~ 17465153 (+)
G480224 NA non-coding upstream 27434 17451583 ~ 17452081 (+)
G480223 LOC106585631 non-coding upstream 28512 17450678 ~ 17451003 (+)
G480221 NA non-coding upstream 29668 17449560 ~ 17449847 (+)
G480220 NA non-coding upstream 30011 17448569 ~ 17449504 (+)
G480218 NA non-coding downstream 16123 17496957 ~ 17497499 (+)
G480250 NA non-coding downstream 18527 17499361 ~ 17499802 (+)
G480304 NA non-coding downstream 99009 17579843 ~ 17580044 (+)
G480309 NA non-coding downstream 102619 17583453 ~ 17583685 (+)
G480219 NA other upstream 33584 17444753 ~ 17445931 (+)
G480128 NA other upstream 158350 17320774 ~ 17321165 (+)
traf1 LOC106585784 other upstream 497295 16970834 ~ 16982251 (+)
G479239 NA other upstream 1119764 16359416 ~ 16359751 (+)
G480062 LOC106585661 other downstream 237036 17717870 ~ 17718201 (+)
LOC110525363 LOC106585667 other downstream 433926 17914750 ~ 17980989 (+)
G481201 NA other downstream 803963 18284797 ~ 18285312 (+)
G481205 NA other downstream 809399 18290233 ~ 18290467 (+)
G481159 NA other downstream 854498 18335332 ~ 18340566 (+)

Expression


Co-expression Network