G480313


Basic Information

Item Value
gene id G480313
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 17588913 ~ 17589136 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU545834
GGATCTCACCGCTCTGTTCAATCTAAGacacacctcaacaacagaaatGACATCAGCATTTGCTTTCCTGTGCATTTGTAGCTATTTTCTCATGTACTCACAGTACTTGCtcaaggatccgcccctttttttcaattttcgcctaaaatgacacacccaaatctaactgcctgtagctcaggacctgaagcaaggatatgcatattcttgataccatttgtgga

Function

NR:

description
PREDICTED: ribonuclease-like 3, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU545834 True 224 lncRNA 0.42 1 17588913 17589136

Neighbor

gene id symbol gene type direction distance location
LOC110525345 NA coding upstream 54578 17526298 ~ 17534335 (+)
LOC110525341 LOC106585648 coding upstream 92776 17488588 ~ 17496137 (+)
LOC110525335 LOC106585645 coding upstream 176057 17360752 ~ 17412856 (+)
med27 med27 coding upstream 270059 17225565 ~ 17318854 (+)
LOC118964847 NA coding upstream 457613 17126955 ~ 17131300 (+)
LOC110525350 LOC106585656 coding downstream 47832 17636968 ~ 17643111 (+)
LOC110525352 LOC106585658 coding downstream 67930 17657066 ~ 17715306 (+)
LOC118964848 NA coding downstream 130373 17719509 ~ 17721149 (+)
LOC110525354 LOC106585663 coding downstream 149408 17738544 ~ 17764617 (+)
LOC110525357 LOC106585662 coding downstream 185550 17774686 ~ 17789072 (+)
G480311 NA non-coding upstream 942 17587693 ~ 17587971 (+)
G480309 NA non-coding upstream 5228 17583453 ~ 17583685 (+)
G480304 NA non-coding upstream 8869 17579843 ~ 17580044 (+)
G480250 NA non-coding upstream 89111 17499361 ~ 17499802 (+)
G480218 NA non-coding upstream 91414 17496957 ~ 17497499 (+)
G480318 NA non-coding downstream 8177 17597313 ~ 17597583 (+)
G480319 NA non-coding downstream 10516 17599652 ~ 17599901 (+)
G480320 NA non-coding downstream 11627 17600763 ~ 17600962 (+)
G480327 NA non-coding downstream 24915 17614051 ~ 17619162 (+)
G480330 pesc non-coding downstream 35626 17624762 ~ 17625656 (+)
G480219 NA other upstream 142982 17444753 ~ 17445931 (+)
G480128 NA other upstream 267748 17320774 ~ 17321165 (+)
dab2ipa LOC106585786 other upstream 481486 17016096 ~ 17126012 (+)
traf1 LOC106585784 other upstream 606693 16970834 ~ 16982251 (+)
G479239 NA other upstream 1229162 16359416 ~ 16359751 (+)
G480062 LOC106585661 other downstream 128734 17717870 ~ 17718201 (+)
LOC110525363 LOC106585667 other downstream 325624 17914750 ~ 17980989 (+)
G481201 NA other downstream 695661 18284797 ~ 18285312 (+)
G481205 NA other downstream 701097 18290233 ~ 18290467 (+)
G481159 NA other downstream 746196 18335332 ~ 18340566 (+)

Expression


Co-expression Network