G480318


Basic Information

Item Value
gene id G480318
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 17597313 ~ 17597583 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU545839
ATACAAAGACAAGATTCCACaaactaaaggtggaaaaaaggctgcctaagtatgatccccaatcagagacaacgatagacagctgcctctgattgggaaccataccagcaAATAAAtggaaaaactagaatgcccacccaaatcacacccgacctaaccaaatagagaaataaaaaggctctctaaggtcagggcgtgacagtgacaATTGCCTGCTAGGGTACGTTTCCATTTAACTGTCTTCTGTCGATTGAAACAGCTGGAAGTAACG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU545839 True 271 lncRNA 0.43 1 17597313 17597583

Neighbor

gene id symbol gene type direction distance location
LOC110525345 NA coding upstream 62978 17526298 ~ 17534335 (+)
LOC110525341 LOC106585648 coding upstream 101176 17488588 ~ 17496137 (+)
LOC110525335 LOC106585645 coding upstream 184457 17360752 ~ 17412856 (+)
med27 med27 coding upstream 278459 17225565 ~ 17318854 (+)
LOC118964847 NA coding upstream 466013 17126955 ~ 17131300 (+)
LOC110525350 LOC106585656 coding downstream 39385 17636968 ~ 17643111 (+)
LOC110525352 LOC106585658 coding downstream 59483 17657066 ~ 17715306 (+)
LOC118964848 NA coding downstream 121926 17719509 ~ 17721149 (+)
LOC110525354 LOC106585663 coding downstream 140961 17738544 ~ 17764617 (+)
LOC110525357 LOC106585662 coding downstream 177103 17774686 ~ 17789072 (+)
G480313 NA non-coding upstream 8177 17588913 ~ 17589136 (+)
G480311 NA non-coding upstream 9342 17587693 ~ 17587971 (+)
G480309 NA non-coding upstream 13628 17583453 ~ 17583685 (+)
G480304 NA non-coding upstream 17269 17579843 ~ 17580044 (+)
G480250 NA non-coding upstream 97511 17499361 ~ 17499802 (+)
G480319 NA non-coding downstream 2069 17599652 ~ 17599901 (+)
G480320 NA non-coding downstream 3180 17600763 ~ 17600962 (+)
G480327 NA non-coding downstream 16468 17614051 ~ 17619162 (+)
G480330 pesc non-coding downstream 27179 17624762 ~ 17625656 (+)
G480344 NA non-coding downstream 54027 17651610 ~ 17651908 (+)
G480219 NA other upstream 151382 17444753 ~ 17445931 (+)
G480128 NA other upstream 276148 17320774 ~ 17321165 (+)
dab2ipa LOC106585786 other upstream 489886 17016096 ~ 17126012 (+)
traf1 LOC106585784 other upstream 615093 16970834 ~ 16982251 (+)
G479239 NA other upstream 1237562 16359416 ~ 16359751 (+)
G480062 LOC106585661 other downstream 120287 17717870 ~ 17718201 (+)
LOC110525363 LOC106585667 other downstream 317177 17914750 ~ 17980989 (+)
G481201 NA other downstream 687214 18284797 ~ 18285312 (+)
G481205 NA other downstream 692650 18290233 ~ 18290467 (+)
G481159 NA other downstream 737749 18335332 ~ 18340566 (+)

Expression


Co-expression Network