G482529


Basic Information

Item Value
gene id G482529
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 19229554 ~ 19231358 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU548345
GCTTCTATCTTTCAAATGTACAGGTGCTTACTATGATTCTTTTTTAGACTGATGCCAAAGTGACAGTATTAAAAACAGGTACGTTCAGGTAGAGGATTATTACAGGATATGACATTTGGGTAGCAGCTTTATTTTATGACAATCTCTCAGCATGTGTCAGAGGCAGGGGTGTGCTTTGCAACAGGTGCTTTACATTAGCGTGGACTTGGCTGTATTGGTCAAAGTGACCTTGCTGATCATGACAGTTCATAACATGGCTGCTCTGGTTCTATCTGAAACTGCCTAGGCCTAGTGTCACTATGCCACCTCTGAACTGTCATCCCTTTGACTTGTCCCCTGTGATTGTCATCCCTGTGACTATCTGTTGTATTGTAATTCAGCCATCACAATGTGTGATACGGTAAACAAAAGCCAGATGGTATTCAACACATTACTTAACAACTCAAACAAACAATATCATCAGGTAGTAAATCAACCAGCATCTATGTAAAATTACATATAAATAttgttttttcatatttttttttgccAATCTTGTAAAACTAACCCCCATACAAAATGTAAGGCTACAGTGCTGTTCTCTGTaatactttatttggatagtccatctgtagagatAGACCATtgagtaacatttcaactaactatctactaaccctagctGTAACCCTAAACTTAATAATAACCCTAAGCTTAGAAcgtaccctaaccttaaccctaaacctaacaatAACcatagcaagcagttgcttatcaacagatagtttgttgatagtatgaccatctgtagagcatctacagatggaaaaTCCAAACTATATAAATAAAATCTGACCTGGTTCTCTAATTGCGCTAACAACTAACCTAGGCTAGCAGAGTAATGGTTCAAAATTCTAATCAAAATTGCACACTAGCTAGCAAATGTTGTATTCTACTGCTCACTAGACTCTTCTGCGTATCTTACAGTgttgataagaggtagtagggatTCATTCATAAACGTCACCACAGAACAAGTTCAAAAAGGAAACTGATATGACATATATAACCTTCATCGCAGGCTAATCAATGACTAAGTATAACTGCTGGACTACATTTTACTGCAGCCTTGGCAAATATGAAAATGGCTCAGATAGTACTGTATGTCCTCCAACAAACCCTCAACAGTTTTCCCATTTATTGTCCTCCCTATCCCTTATGCTACTGATCCAATCCCCCAACTCAATATAGCTACTAATCAGTGTCCTGGAAAAATCTTGTATAAAAAAGTTTACTTTTGAGGAATCTGAAACAATGTTGTTGTTGCCATATATTAATGGGAATTCACATGGCTTTTTGAATTACTTATAATAGTACTAGATTCATTAATCTTTCACAGAACATGGAGTGGAATGTTCTGTGAAACTTTCAatttatgtttaaaaaaattgAGATACAGAGTTTTTCTAGGACGCCGACGTACGACAGAATTTGCTTCGCACTCATGCAACACactacttcctcctcctcctcaatctCAGTGATCACCATCCCTAGTCCTGGAAACCTATAGGGTGTGGAGGTTTTTGTTCCAACCCTACAATCACACAGCTTGTTCAACGAGTCAACTGATTATCGACCCTTTGAGTAGCTTGATCTGATGTGTTAGTAAGGGCTAGAACAAAAAGCTGATCACTTGGGCTGTTCCCTGAGGGCCCCTGTGTCTGTGGCCTTCCAGATGTGGAGGGCTGTTCCGGCAGAGAGGACCAGGAAAAAGAGGAAGGCAGTGGGGAAACCCACCCAGTCCACCAGGCCCCCTGCCAGGG
>TU548343
ATCTCTCAGCATGTGTCAGAGGCAGGGGTGTGCTTTGCAACAGGTGCTTTACATTAGCGTGGACTTGGCTGTATTGGTCAAAGTGACCTTGCTGATCATGACAGTTCATAACATGGCTGCTCTGGTTCTATCTGAAACTGCCTAGGCCTAGTGTCACTATGCCACCTCTGAACTGTCATCCCTTTGACTTGTCCCCTGTGATTGTCATCCCTGTGACTATCTGTTGTATTGTAATTCAGCCATCACAATGTGTGATACGGTAAACAAAAGCCAGATGGTATTCAACACATTACTTAACAACTCAAACAAACAATATCATCAGGTAGTAAATCAACCAGCATCTATGTAAAATTACATATAAATAttgttttttcatatttttttttgccAATCTTGTAAAACTAACCCCCATACAAAATGTAAGGCTACAGTGCTGTTCTCTGTaatactttatttggatagtccatctgtagagatAGACCATtgagtaacatttcaactaactatctactaaccctagctGTAACCCTAAACTTAATAATAACCCTAAGCTTAGAAcgtaccctaaccttaaccctaaacctaacaatAACcatagcaagcagttgcttatcaacagatagtttgttgatagtatgaccatctgtagagcatctacagatggaaaaTCCAAACTATATAAATAAAATCTGACCTGGTTCTCTAATTGCGCTAACAACTAACCTAGGCTAGCAGAGTAATGGTTCAAAATTCTAATCAAAATTGCACACTAGCTAGCAAATGTTGTATTCTACTGCTCACTAGACTCTTCTGCGTATCTTACAGTgttgataagaggtagtagggatTCATTCATAAACGTCACCACAGAACAAGTTCAAAAAGGAAACTGATATGACATATATAACCTTCATCGCAGGCTAATCAATGACTAAGTATAACTGCTGGACTACATTTTACTGCAGCCTTGGCAAATATGAAAATGGCTCAGATAGTACTGTATGTCCTCCAACAAACCCTCAACAGTTTTCCCATTTATTGTCCTCCCTATCCCTTATGCTACTGATCCAATCCCCCAACTCAATATAGCTACTAATCAGTGTCCTGGAAAAATCTTGTATAAAAAAGTTTACTTTTGAGGAATCTGAAACAATGTTGTTGTTGCCATATATTAATGGGAATTCACATGGCTTTTTGAATTACTTATAATAGTACTAGATTCATTAATCTTTCACAGAACATGGAGTGGAATGTTCTGTGAAACTTTCAatttatgtttaaaaaaattgAGATACAGAGTTTTTCTAGGACGCCGACGTACGACAGAATTTGCTTCGCACTCATGCAACACactacttcctcctcctcctcaatctCAGTGATCACCATCCCTAGTCCTGGAAACCTATAGGGTGTGGAGGTTTTTGTTCCAACCCTACAATCACACAGCTTGTTCAACGAGTCAACTGATTATCGACCCTTTGAGTAGCTTGATCTGATGTGTTAGTAAGGGCTAGAACAAAAAGCTGATCACTTGGGCTGTTCCCTGAGGGCCCCTGTGTCTGTGGCCTTCCAGATGTGGAGGGCTGTTCCGGCAGAGAGGACCAGGAAAAAGAGGAAGGCAGTGGGGAAACCCACCCAGTCCACCAGGCCCCCTGCCAGGG
>TU548347
ATCTCTCAGCATGTGTCAGAGGCAGGGGTGTGCTTTGCAACAGGTGCTTTACATTAGCGTGGACTTGGCTGTATTGGTCAAAGTGACCTTGCTGATCATGACAGTTCATAACATGGCTGCTCTGGTTCTATCTGAAACTGCCTAGGCCTAGTGTCACTATGCCACCTCTGAACTGTCATCCCTTTGACTTGTCCCCTGTGATTGTCATCCCTGTGACTATCTGTTGTATTGTAATTCAGCCATCACAATGTGTGATACGGTAAACAAAAGCCAGATGGTATTCAACACATTACTTAACAACTCAAACAAACAATATCATCAGGTAGTAAATCAACCAGCATCTATGTAAAATTACATATAAATAttgttttttcatatttttttttgccAATCTTGTAAAACTAACCCCCATACAAAATGTAAGGCTACAGTGCTGTTCTCTGTaatactttatttggatagtccatctgtagagatAGACCATtgagtaacatttcaactaactatctactaaccctagctGTAACCCTAAACTTAATAATAACCCTAAGCTTAGAAcgtaccctaaccttaaccctaaacctaacaatAACcatagcaagcagttgcttatcaacagatagtttgttgatagtatgaccatctgtagagcatctacagatggaaaaTCCAAACTATATAAATAAAATCTGACCTGGTTCTCTAATTGCGCTAACAACTAACCTAGGCTAGCAGAGTAATGGTTCAAAATTCTAATCAAAATTGCACACTAGCTAGCAAATGTTGTATTCTACTGCTCACTAGACTCTTCTGCGTATCTTACAGTgttgataagaggtagtagggatTCATTCATAAACGTCACCACAGAACAAGTTCAAAAAGGAAACTGATATGACATATATAACCTTCATCGCAGGCTAATCAATGACTAAGTATAACTGCTGGACTACATTTTACTGCAGCCTTGGCAAATATGAAAATGGCTCAGATAGTACTGTATGTCCTCCAACAAACCCTCAACAGTTTTCCCATTTATTGTCCTCCCTATCCCTTATGCTACTGATCCAATCCCCCAACTCAATATAGCTACTAATCAGTGTCCTGGAAAAAT
>TU548344
TCTGTaatactttatttggatagtccatctgtagagatAGACCATtgagtaacatttcaactaactatctactaaccctagctGTAACCCTAAACTTAATAATAACCCTAAGCTTAGAAcgtaccctaaccttaaccctaaacctaacaatAACcatagcaagcagttgcttatcaacagatagtttgttgatagtatgaccatctgtagagcatctacagatggaaaaTCCAAACTATATAAATAAAATCTGACCTGGTTCTCTAATTGCGCTAACAACTAACCTAGGCTAGCAGAGTAATGGTTCAAAATTCTAATCAAAATTGCACACTAGCTAGCAAATGTTGTATTCTACTGCTCACTAGACTCTTCTGCGTATCTTACAGTgttgataagaggtagtagggatTCATTCATAAACGTCACCACAGAACAAGTTCAAAAAGGAAACTGATATGACATATATAACCTTCATCGCAGGCTAATCAATGACTAAGTATAACTGCTGGACTACATTTTACTGCAGCCTTGGCAAATATGAAAATGGCTCAGATAGTACTGTATGTCCTCCAACAAACCCTCAACAGTTTTCCCATTTATTGTCCTCCCTATCCCTTATGCTACTGATCCAATCCCCCAACTCAATATAGCTACTAATCAGTGTCCTGGAAAAAT
>TU548346
TCTGTaatactttatttggatagtccatctgtagagatAGACCATtgagtaacatttcaactaactatctactaaccctagctGTAACCCTAAACTTAATAATAACCCTAAGCTTAGAAcgtaccctaaccttaaccctaaacctaacaatAACcatagcaagcagttgcttatcaacagatagtttgttgatagtatgaccatctgtagagcatctacagatggaaaaTCCAAACTATATAAATAAAATCTGACCTGGTTCTCTAATTGCGCTAACAACTAACCTAGGCTAGCAGAGTAATGGTTCAAAATTCTAATCAAAATTGCACACTAGCTAGCAAATGTTGTATTCTACTGCTCACTAGACTCTTCTGCGTATCTTACAGTgttgataagaggtagtagggatTCATTCATAAACGTCACCACAGAACAAGTTCAAAAAGGAAACTGATATGACATATATAACCTTCATCGCAGGCTAATCAATGACTAAGTATAACTGCTGGACTACATTTTACTGCAGCCTTGGCAAATATGAAAATGGCTCAGATAGTACTGTATGTCCTCCAACAAACCCTCAACAGTTTTCCCATTTATTGTCCTCCCTATCCCTTATGCTACTGATCCAATCCCCCAACTCAATATAGCTACTAATCAGTGTCCTGGAAAAATCTTGTATAAAAAAGTTTACTTTTGAGGAATCTGAAACAATGTTGTTGTTGCCATATATTAATGGGAATTCACATGGCTTTTTGAATTACTTATAATAGTACTAGATTCATTAATCTTTCACAGAACATGGAGTGGAATGTTCTGTGAAACTTTCAatttatgtttaaaaaaattgAGATACAGAGTTTTTCTAGGACGCCGACGTACGACAGAATTTGCTTCGCACTCATGCAACACactacttcctcctcctcctcaatctCAGTGATCACCATCCCTAGTCCTGGAAACCTATAGGGTGTGGAGGTTTTTGTTCCAACCCTACAATCACACAGCTTGTTCAACGAGTCAACTGATTATCGACCCTTTGAGTAGCTTGATCTGATGTGTTAGTAAGGGCTAGAACAAAAAGCTGATCACTTGGGCTGTTCCCTGAGGGCCCCTGTGTCTGTGGCCTTCCAGATGTGGAGGGCTGTTCCGGCAGAGAGGACCAGGAAAAAGAGGAAGGCAGTGGGGAAACCCACCCAGTCCACCAGGCCCCCTGCCAGGG

Function

NR:

description
major facilitator superfamily domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU548345 False 1805 lncRNA 0.40 1 19229554 19231358
TU548343 False 1664 lncRNA 0.40 1 19229695 19231358
TU548347 False 1114 lncRNA 0.38 1 19229695 19230808
TU548344 False 675 lncRNA 0.37 1 19230134 19230808
TU548346 True 1225 lncRNA 0.40 1 19230134 19231358

Neighbor

gene id symbol gene type direction distance location
LOC110525400 LOC106585702 coding upstream 206634 18975768 ~ 19022920 (+)
LOC118964850 NA coding upstream 255261 18972352 ~ 18974293 (+)
LOC110525399 LOC106585699 coding upstream 265667 18957394 ~ 18963887 (+)
LOC110525398 ostf1 coding upstream 286981 18925149 ~ 18942573 (+)
LOC110525396 LOC106585698 coding upstream 309962 18895916 ~ 18919592 (+)
LOC110525403 LOC106585349 coding downstream 63880 19295238 ~ 19304130 (+)
LOC110525111 NA coding downstream 116450 19347808 ~ 19349023 (+)
LOC110525406 LOC106585353 coding downstream 228673 19460031 ~ 19469464 (+)
LOC110525411 f108b coding downstream 272283 19503641 ~ 19539094 (+)
LOC110525412 LOC106585357 coding downstream 304568 19535926 ~ 19573442 (+)
G482525 NA non-coding upstream 1139 19228156 ~ 19228415 (+)
G482524 NA non-coding upstream 1716 19227611 ~ 19227838 (+)
G482516 NA non-coding upstream 7968 19221359 ~ 19221586 (+)
G482511 NA non-coding upstream 10690 19218659 ~ 19218864 (+)
G482508 NA non-coding upstream 12443 19216905 ~ 19217111 (+)
G482530 NA non-coding downstream 207 19231565 ~ 19231884 (+)
G482532 NA non-coding downstream 4513 19235871 ~ 19236129 (+)
G482533 NA non-coding downstream 5686 19237044 ~ 19237511 (+)
G482540 NA non-coding downstream 15662 19247020 ~ 19247236 (+)
G482541 NA non-coding downstream 17914 19249272 ~ 19249472 (+)
G482000 NA other upstream 371398 18857627 ~ 18858156 (+)
G481159 NA other upstream 888988 18335332 ~ 18340566 (+)
G481205 NA other upstream 939087 18290233 ~ 18290467 (+)
G481201 NA other upstream 944242 18284797 ~ 18285312 (+)
LOC110525363 LOC106585667 other upstream 1251155 17914750 ~ 17980989 (+)
G482551 LOC106585704 other downstream 27791 19259149 ~ 19259608 (+)
LOC110525429 NA other downstream 1303151 20533279 ~ 20537508 (+)
LOC110525431 LOC106585378 other downstream 1369460 20591803 ~ 20603188 (+)
G483669 LOC106585393 other downstream 1571418 20802776 ~ 20803806 (+)
LOC110525116 adamtsl2 other downstream 1727397 20958755 ~ 20984618 (+)

Expression


Co-expression Network