G482615


Basic Information

Item Value
gene id G482615
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 19314935 ~ 19322851 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU548440
ccccagatctgtgcctcgacacaagcctgtctcagagctctacggacaattccttcgacctcatggcttggtttttactctgacattcactgtcaaatgtggggccttaaatagacaggttgtgtgcctttccaaatcatgtcaaattcatttaccacaggtggactccaaccaagttgaagaaacagctcaaggatgatcaatgggaacaagatgcaccggagctcaatttcaaatacttacttatgtaaataaggtacttctgtttggtatttttaatacatttgcaaaattgtcTTAAAaccggttttcactttgtcattatggggtattgcgtgtagattgatgagctaaaaaaatatgtaattaatttgattaaggctgtaacgtaacaaaattccagaaaaagtcaaggggtctgaatactttccgaacgcactgtatATATGGAAAATTAAATAAGGACATCTTTCGGTCGAACAAGATTTTCTTGTTGTTGGGGACACCCCTAGTGGTTTTAAAAGTTGATCAAATTTCAAAGCAGCATAACGTTCCATGTTTCGATTAGACTTAAGCTCACAGAGCTGTGCCGTCACATATTCACCTTGGCGGAGTTGAGAAGCACTTCTGGTGGTCAGAATGTCTATGAAGACAGAGCAGTctgttcccttcctcttctctccagccTCATACAGGGCCTATGGATCGATAGAGTAGGCACAGGCATCACATACAGGAATCGCATTACACATTGACTTCTTAAATTCTCTCattcacagacacaaacacactccctctcgctcttttCTCCATACCCTGGCATCACTGTCAGCAAGTTCCTGGTTCACCATGGTGTCCTCATTCCtagtagcctacagtatgtgaaggggggaggagggtgggTTTATTGTTCCAAACTATTCATCCGAAGTtaaaacaataacacacacacacacacacaccttgcagaGCGAAAGCAGAGCATTCCTGAAGTCTCCACCTGTGTCAGACTTGATGTCATTCTCCAGCTCCTTTTTGTATTCTAGCAAGAAAAAAGCCATGATTATTGACTTGTAACTATCACATCACGTACAGGACATTTACATATTGCAGACAAACATATTACACACCTTCCTTATAGACCTTCTTTATCTCTTTGATCTCTTTATTGGTCCTGGAGGCCAGAATCTCAATCAGAGTATCCTCATCTGTGCCCAATCCCTGAGAGAAATAGGTGAGAGGGTCAACTAGGACAAAAGGGTCACATCAGTCATAAAGCTGAGACAAACGAGCCCAGGACTGGATGACACAAACACAAAGAGTAGGGCCATGTTAATTATGCACCAAACGGAACAAAACAGGGGACTACCTGCACTTACAAGTCTATCACTATACCACCAGACACCACACTGCTAGCATATAATGttttaaaaacaaaatgttttggttggttgtcctatggttattttgcatataACCTTCCgcgaatggtgcaggatagttgcttggcttcattctcagcacatttaaggaacttgacaaaaaaaattTATATGAATTATTATTCATTACCTTAACATTTActaaaaccacaagaaaacattaGAAATGTTCAATGAACGTTAGAGCTAATTTAGGCCAAatggagaactgcaaaagtgttgctactgctctcaacaaaattgctgccctgaatttagcaggcgctatCGACAAAGATCAGTGGAAAAAGGTTGTGAcggactactttctgcacacagtcagtgtgaaccggagtgacttgacaaCAGGACAAACAAGTGTTCATCCATGTAAGAGTCTAGCTTCATTTTCAGgtattatacgtttctaatttagTCAGAAATGAGTTGTTTTCATTTTAaattaaagcgtactgttagctagcttgcgaacgatagctagctagccagccagcaaCCTAATGTTAGGTGGATGATCTGCAATCCATTTccatagctagttatagtcgaatgttagctagctaacattgaacctagttggtttgCTTTAGCTACCTTAATATTCAAACTACAGCATTTCATGCATGGTGGCTAGCTACAACAATCCATTTGTACTGCAGCtatgggttgggattatggtttaTTGTTCAGCTACCTACCTGTCTAAGCAGAAGACTCCACTTCGCCAGACGATGACAtaacccatcaagttagccagctgtgtctgggggtgattatggtgatctattgtatttcatgaacatgtgcacatgtctagacaatagtgacgaATCCACTTAGTTTGATGTGGCTGGGttggtggttatagcatttctttcacatgaacCATCAATTTAGACAATATTTGTATAACCATTTCACTGTTCCGTTTACACCTTTATCCTGtacacgtgacaaatacattttgatttaatATACTGTGTATTTACCATAAACGGCAATATGAAGAACAGGACCTGCAAAGtaagattaggatataggccaaggactagagtCTATTTTTACTACTATTTTCAATACTACTTTCAGCACTTTTAGTATTGAAATCTTTGGACGTTTACCTtcttactcactctgtttagcacatggcctcatgtgaatccttaaagagatgggtggggctaaagagggtgtgaacgatgctgaatgggtgtagacaaagaagagctctagtaggtgtaccaaaacattcaaggaccATTTTCTCAAAGCGGAAATACTTACCAATTGTTCCTCAattgcagtgtatgatataccactgtagctctgagtctgtacttttatccaatgtaaaaacacaatttaaaatgttgaCACAAGACTGAATTGAGGTGGTGGGTcacaaatatattttccataaccaataatattgtattttcagccgtttgaaactggtgtacaaaaccaaaagacgcaaaaacaaaacttaacggTAAGCATAGAGAaagtgcacatagaacagctcTACTGCTTCTTAGAGACTTGCTTTCAACGAGAATGACAGATGTATacctcacatttctatgtgaatttggccgGGTCAATGTGGCCGggttctatgtgaatttggccgggtcgcccaaaaagttacacaaTGGAACTTTCAATGTATTCAAATGTattaattggccacacctgatcttaatgagcgTTTATTTTCCTTTGGAATGGTgtttgtttgaatagactaaaatgaaccgCTTTGTATGTGTTAAAAATATATGGTATGGCGCAATGAACTAATTctatggatagagaacagaagattatAGGTTCGAATCGGACTGACTCCATATGTCCTGTGACTGGAGTTAACGCAAACTAAGTTAGCCGtgttattatactgaacaaaaatacaacacaatttcaacaattttaccgagttacagttcataaggaaatcagtcaaattaaataaattcattagggcctaatctatgaatttctcaagactgggaatacagatatgtagttgttggtcacagataccgtaCAAAAAAAGTAAGGGcgtgaatcagaaaaccagtcagtatctgttgtgtccaccatttgcctcatgcagcacaacatctACTTCACAGAGTTGATCAgattgttgattgtggcctgtggaatgttgtcccagtcctcttcaatggcggttcaaagttgctggatattggcgggaactggaacatgctatcATAcaagtcaatccagagcatcGCAAATGTGCTCAAtggtctggtgagtatgcaggccatggaagaactgggacattttcagcttccaggaattgtgtacagatcatgctgaaacatggcaGCGGATgaaatggcacaacaatgggcttcaggatctcattttatctctgtgcattcaaatgacCATTGATAAAATTCAATTGTGTTCGCTGTCCGTCGCTTacacctgcccataccataaccgcaccatagggcactctgttcacaacatcgACATCAACAAAACACTCACACGTCtgtcatctgcccggtacagtttaaacctggattaatccgtgaagagcacacttctccagcgtgccagtggccattgaaggtgagcattttccccccgaagtcagttacgacaccgaactgcagtcaggccaAGACAATTgtgaggacgatgagcacacagatgagcttccctgagacggtttctgaatGTTTGTGCAGGAATTcctcggttgtgcaaacccagagtttcatcagctgtctgggaggctggtctcagacaatcccgcagatgaagaagccTGATGGAGGTcgtgggctggcatggttacacatggtctgcggttgcgaGGCCGGTTGTAAAATCTGCCAAATTCTCCAagacaacgttggaggcggcttatggtagagagatgaacattaaattctctggcaacagctctggtgggcattcaAACCaactgcatgctccctcaacttgagacctgtggcattgtgttgtgtgacaaaaaggcacattttagagtggcctttccttgtccccagcacaaggtgcacctgtgtaatgataatgcgttttaatcagtttattgatgcgccacacctgtcaggtggattacccaggcaaaggagaaatgctcactaatagggaagtaaacaaatttgttccaaaaatcagaaataaataacctggggggggggggggggcagagaccaacactttacatgttgcatttatatttctgttcagtataacaAAAAGTTTAATTGAAACATGTTCACAGAACATTATTAAATTATCTTtaaataacctataatttccaTTCTTAGAacattaataaaacctcccaggaaaactttaaAGGGACCATAGGAACCTCCCTGCAACCATTTTAccagtcaggaaacgtatggcttaGTTaacagaaccaatgggaaaccaaaaacatacgttcccacaacttcctagaaaccaaatgtgctagctgggatcacacacactgcacatgcAGACTTGTGTATCTTGAAACTTAAAGTACAGTAGGTACTCATCACCCCTTTTCTTACCGTCTCCTCACATATTAAAACAGCTCCACCCATTGTATAAAGAATACAGACAGTCCCACACATTTTAAAAAGTCCCACCGTTATTACACAACACTATAATAAAGCAGAATGCAGTCAATATGGGTAGGGTGTTAGGAAGTGGGTGGGTCTGACTAAACAGCAGGACAAGAATACAGGATGATGTCATCCCAGCGTCCTCTTTAGAAGGTAATCATTACTCTATAATTATTTGTATTATATCTGTTACCGTCTCTAGGCCACCCGAACGGAGGGAAAGATACACATTTGTTTGTATTCTAAGTAGTATTGTATATTCTTAGTAGtagtgagtgactgagtgtgtaCCTTCATGGCCAGTTTGAGCTGTTGGGCGTCATATTGGGCTGGCGTTTTGAGCAGTGCCAGAACCACATCCTCCAGCTCTCCATTTAGGGCCGACTTCAGGGCAGTCTCCAGAGGCTGCAGATAGAGGGTTGATACACACTTCCACAGTCATACACAAGTGTGTGTTTAAGCTTTCCAGGTGCACCAGGTGGCTGGAGTTCGCACGTTTTGCATCGTTCCATTGATCCTGAAGTGCAAATTCCACCCACGAGCCACCACCCGCACATGTTAAACCAAACGCACCTAGTGGGTGTCCCGTCTTACCTTGCCACTAGCCTTTTGGTAGCTAGCTTTGATCTGCTGTCTCTGGGCGTTGCTCCTCTTCACCAGCACATCAATGATGGTGTTCTCATCCACACCTACGTCACAGAGACAAGATGGAATGACTTGTTCAATAGATGGGTTGGCTGACAACGTCACGAAAATGATGAGCATGTGTCGGTGTGGCCAGAAGGTGTGCGTTATGATTCTGAacggtcagatagctagcaacaaatGACAAAAAGCTGTCATGTAGGGAATCGTGGGTGTCTTGTTTCATCTCGTTTCATCTTtttattgataccatgtcttgttttgactaATGTCctgtctatgctaatatggctaaaattTGCTAGATACCTAACCAACAACTTCAGACGAAGTATAGCCAATCCCATCTGTTTTGCCAAATAGTTGTACACTcatcggttttgttgctaaacagcCATCCCGTCTCTAGGAAACACCATTGCCTAGCCTAATCCATGAGCCCTTATCCATTTTTTAAACTAACACAAAAAAGGCGTACGGTGAGAAATCTTTGACTACTCCCCTGCAAAAGACAATAGAAACAGACATGTACACACATGCTCACATTCCTTCTCAGAATGTCCCCC

Function

NR:

description
Transposable element Tcb2 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU548440 True 6291 lncRNA 0.42 3 19314935 19322851

Neighbor

gene id symbol gene type direction distance location
LOC110525403 LOC106585349 coding upstream 10805 19295238 ~ 19304130 (+)
LOC110525400 LOC106585702 coding upstream 292015 18975768 ~ 19022920 (+)
LOC118964850 NA coding upstream 340642 18972352 ~ 18974293 (+)
LOC110525399 LOC106585699 coding upstream 351048 18957394 ~ 18963887 (+)
LOC110525398 ostf1 coding upstream 372362 18925149 ~ 18942573 (+)
LOC110525111 NA coding downstream 24957 19347808 ~ 19349023 (+)
LOC110525406 LOC106585353 coding downstream 137180 19460031 ~ 19469464 (+)
LOC110525411 f108b coding downstream 180790 19503641 ~ 19539094 (+)
LOC110525412 LOC106585357 coding downstream 213075 19535926 ~ 19573442 (+)
LOC110525413 LOC106585358 coding downstream 349532 19672383 ~ 19828744 (+)
G482603 NA non-coding upstream 27955 19286337 ~ 19286980 (+)
G482599 NA non-coding upstream 33453 19280928 ~ 19281482 (+)
G482590 NA non-coding upstream 39281 19275369 ~ 19275654 (+)
G482549 NA non-coding upstream 57632 19257079 ~ 19257303 (+)
G482548 NA non-coding upstream 58094 19256585 ~ 19256841 (+)
G482625 NA non-coding downstream 2631 19325482 ~ 19325717 (+)
G482635 NA non-coding downstream 17933 19340784 ~ 19341012 (+)
G482616 NA non-coding downstream 35693 19358544 ~ 19358790 (+)
G482694 NA non-coding downstream 48648 19371499 ~ 19372103 (+)
G482722 NA non-coding downstream 67887 19390738 ~ 19390938 (+)
G482551 LOC106585704 other upstream 55327 19259149 ~ 19259608 (+)
G482000 NA other upstream 456779 18857627 ~ 18858156 (+)
G481159 NA other upstream 974369 18335332 ~ 18340566 (+)
G481205 NA other upstream 1024468 18290233 ~ 18290467 (+)
G481201 NA other upstream 1029623 18284797 ~ 18285312 (+)
LOC110525429 NA other downstream 1211658 20533279 ~ 20537508 (+)
LOC110525431 LOC106585378 other downstream 1277967 20591803 ~ 20603188 (+)
G483669 LOC106585393 other downstream 1479925 20802776 ~ 20803806 (+)
LOC110525116 adamtsl2 other downstream 1635904 20958755 ~ 20984618 (+)
G484674 NA other downstream 2141288 21464139 ~ 21466905 (+)

Expression


Co-expression Network