G482736


Basic Information

Item Value
gene id G482736
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 19411015 ~ 19416054 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU548568
AAGTGGTTTATAGATATTTTATTAGTTTAAAGTAGGGATGCACTATATTTCGAaatcggccgatattagctaaaaatgccaacatcggcatcGTCTCTatgtgttatggtgagtgaatgaggacccaaaagcgaactaacttaaacagagcttctttaataaccaaacataggtaggctcagatagactggcagattccgacaggacaggacaaggttacagcaaacatgacgatagtctggctcaggcatgaaacacaacaaacaagaatccgacaaggacaggaacagaaacagagagagatatagggacctaatcagagggaaaaagggaacaggtgggaaacggggtgaatgggtagttagaggagacaaggaacagctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU548568 True 384 lncRNA 0.42 2 19411015 19416054

Neighbor

gene id symbol gene type direction distance location
LOC110525111 NA coding upstream 61992 19347808 ~ 19349023 (+)
LOC110525403 LOC106585349 coding upstream 106885 19295238 ~ 19304130 (+)
LOC110525400 LOC106585702 coding upstream 388095 18975768 ~ 19022920 (+)
LOC118964850 NA coding upstream 436722 18972352 ~ 18974293 (+)
LOC110525399 LOC106585699 coding upstream 447128 18957394 ~ 18963887 (+)
LOC110525406 LOC106585353 coding downstream 43977 19460031 ~ 19469464 (+)
LOC110525411 f108b coding downstream 87587 19503641 ~ 19539094 (+)
LOC110525412 LOC106585357 coding downstream 119872 19535926 ~ 19573442 (+)
LOC110525413 LOC106585358 coding downstream 256329 19672383 ~ 19828744 (+)
klf9 LOC106585360 coding downstream 422850 19836385 ~ 19854201 (+)
G482722 NA non-coding upstream 20077 19390738 ~ 19390938 (+)
G482694 NA non-coding upstream 38912 19371499 ~ 19372103 (+)
G482616 NA non-coding upstream 52225 19358544 ~ 19358790 (+)
G482635 NA non-coding upstream 70003 19340784 ~ 19341012 (+)
G482625 NA non-coding upstream 85298 19325482 ~ 19325717 (+)
G482828 NA non-coding downstream 99288 19515342 ~ 19516151 (+)
G482829 NA non-coding downstream 102569 19518623 ~ 19519383 (+)
G482809 NA non-coding downstream 150454 19566508 ~ 19567138 (+)
G482854 NA non-coding downstream 160510 19576564 ~ 19577062 (+)
G482856 NA non-coding downstream 163104 19579158 ~ 19579360 (+)
G482551 LOC106585704 other upstream 151407 19259149 ~ 19259608 (+)
G482000 NA other upstream 552859 18857627 ~ 18858156 (+)
G481159 NA other upstream 1070449 18335332 ~ 18340566 (+)
G481205 NA other upstream 1120548 18290233 ~ 18290467 (+)
G481201 NA other upstream 1125703 18284797 ~ 18285312 (+)
LOC110525429 NA other downstream 1118455 20533279 ~ 20537508 (+)
LOC110525431 LOC106585378 other downstream 1184764 20591803 ~ 20603188 (+)
G483669 LOC106585393 other downstream 1386722 20802776 ~ 20803806 (+)
LOC110525116 adamtsl2 other downstream 1542701 20958755 ~ 20984618 (+)
G484674 NA other downstream 2048085 21464139 ~ 21466905 (+)

Expression


Co-expression Network