G483021


Basic Information

Item Value
gene id G483021
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 19659895 ~ 19660386 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU548875
CTTCTAtacaaatcctctcaagctctgtcaggttggatagggagcgtcgctgcacaatccaggtctctacagagatgttcaattgggtccaagtccgggctctggcttggccactcaaggacattcagagacttgtcccgaagccactcctgcattgtcttggctgtgtgcttagggtcattgtcctgttggaaggttaacctttgccccagtctgaggtcctgagcgctctggagcaggttttcatcaaggatctctctgtactttgctccgttcatctttccctcaatcctgactagtctcccagtccctgccactgacaaacatccccacagcattatgctgccaccaccatgcttcaccgtattggccaggtgatgagcagtgcTTGGTTTCCACCAGATgtaacacttggcattcaggccaaagagttcaatcttggtttcatcagaccagagaatcttgtttctcatggtctgagagtcctttagg

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU548875 True 492 lncRNA 0.50 1 19659895 19660386

Neighbor

gene id symbol gene type direction distance location
LOC110525412 LOC106585357 coding upstream 86453 19535926 ~ 19573442 (+)
LOC110525411 f108b coding upstream 120801 19503641 ~ 19539094 (+)
LOC110525406 LOC106585353 coding upstream 190431 19460031 ~ 19469464 (+)
LOC110525111 NA coding upstream 310872 19347808 ~ 19349023 (+)
LOC110525403 LOC106585349 coding upstream 355765 19295238 ~ 19304130 (+)
LOC110525413 LOC106585358 coding downstream 11997 19672383 ~ 19828744 (+)
klf9 LOC106585360 coding downstream 178518 19836385 ~ 19854201 (+)
LOC110525113 LOC101448038 coding downstream 259267 19919653 ~ 19944048 (+)
LOC110525417 LOC106585364 coding downstream 285483 19945869 ~ 20011732 (+)
LOC110525418 LOC106585365 coding downstream 379180 20039566 ~ 20064147 (+)
G482864 NA non-coding upstream 13953 19586031 ~ 19645942 (+)
G482856 NA non-coding upstream 80535 19579158 ~ 19579360 (+)
G482854 NA non-coding upstream 82833 19576564 ~ 19577062 (+)
G482809 NA non-coding upstream 92757 19566508 ~ 19567138 (+)
G482829 NA non-coding upstream 140512 19518623 ~ 19519383 (+)
G483066 NA non-coding downstream 51506 19711892 ~ 19712932 (+)
G483089 NA non-coding downstream 90085 19750471 ~ 19751281 (+)
G483118 NA non-coding downstream 155972 19816358 ~ 19816794 (+)
G483123 NA non-coding downstream 172943 19833329 ~ 19833701 (+)
G483201 NA non-coding downstream 175057 19835443 ~ 19836210 (+)
G482551 LOC106585704 other upstream 400287 19259149 ~ 19259608 (+)
G482000 NA other upstream 801739 18857627 ~ 18858156 (+)
G481159 NA other upstream 1319329 18335332 ~ 18340566 (+)
G481205 NA other upstream 1369428 18290233 ~ 18290467 (+)
G481201 NA other upstream 1374583 18284797 ~ 18285312 (+)
LOC110525429 NA other downstream 874123 20533279 ~ 20537508 (+)
LOC110525431 LOC106585378 other downstream 940432 20591803 ~ 20603188 (+)
G483669 LOC106585393 other downstream 1142390 20802776 ~ 20803806 (+)
LOC110525116 adamtsl2 other downstream 1298369 20958755 ~ 20984618 (+)
G484674 NA other downstream 1803753 21464139 ~ 21466905 (+)

Expression


Co-expression Network