G483721 (LOC106585399)


Basic Information

Item Value
gene id G483721
gene name LOC106585399
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 20923166 ~ 20926045 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU549712
TTCTTAAATGGCTTTATTAAGACCCACTAGAGGGAGCTGAAATGGTTTGGTAAAATGTGGGGCAGATCTGCTCAAGTACAATTAGACAAATTAGACAAAAAAAAAGTTCATTTTTTTGTTTTCACCAGGCAAGAAGTTCCCTCAAGGGAAAAATAAAGTTATTCTATTCAAAATCTTGTTTATTGTTGATTTCTGGACCTGTGTATACAGTATAAATTGCTTACAGAAAACCTGAGATTTAAATAGAAAGGTTTAATGATGTAAAGCGATGTTGAGTGGTTCAGCAATAATGTTAAGCAGGCCTCTATTTTCCCCTCAGGTAATAGGGTTATATTGATAGCTTCCAATGTCAACCTTCAAGACATTTCAACCCACTATCCCATATTAAATACAACAGATTCTTCATGTACAACACGTGAGGCAGTGACGTATATGAGTAATATGACTCAGACTTTTTATAGAGTATGGCAACAGTTCTCTGTATATTCAATAGTGTTATTGTACAATACATGTATGTAAAGTAGAGAGCGAAACAGAAGACCCAGGATATGTAAGGGTGATGCGCTCCTATCTTGGTCCAGTATGATGGTGTGGAGTTCTTTAACCAATGTTTGCTGTTAGGTCTACGAACGATGGGGTCAGAATGGAGTCTGCAGAGAAGCCCAGAGACAGAGAATAGTTTCTAAATCTCTCCACCAATTCTTTTCTCAGCGTTGGAGAGCGACCTTAAGAAAAACAGAGTGG
>TU549713
TTCTTAAATGGCTTTATTAAGACCCACTAGAGGGAGCTGAAATGGTTTGGTAAAATGTGGGGCAGATCTGCTCAAGTACAATTAGACAAATTAGACAAAAAAAAAGTTCATTTTTTTGTTTTCACCAGGCAAGAAGTTCCCTCAAGGGAAAAATAAAGTTATTCTATTCAAAATCTTGTTTATTGTTGATTTCTGGACCTGTGTATACAGTATAAATTGCTTACAGAAAACCTGAGATTTAAATAGAAAGGTTTAATGATGTAAAGCGATGTTGAGTGGTTCAGCAATAATGTTAAGCAGGCCTCTATTTTCCCCTCAGGTAATAGGGTTATATTGATAGCTTCCAATGTCAACCTTCAAGACATTTCAACCCACTATCCCATATTAAATACAACAGATTCTTCATGTACAACACGTGAGGCAGTGACGTATATGAGTAATATGACTCAGACTTTTTATAGAGTATGGCAACAGTTCTCTGTATATTCAATAGTGTTATTGTACAATACATGTATGTAAAGTAGAGAGCGAAACAGAAGACCCAGGATATGTAAGGGTGATGCGCTCCTATCTTGGTCCAGTATGATGGTGTGGAGTTCTTTAACCAATGTTTGCTGTTAGGTCTACGAACGATGGGGTCAGAATGGAGTCTGCAGAGAAGCCCAGAGACAGAGAATAGTTTCTAAATCTCTCCACCAATTCTTTTCTCAGCGTTGGAGAGCGACCATAAAGAGACACCTGGGAGAATTCTTTCACAATCTTCTTGTATTTCACCACCAGACCATATTCAGTGTAATTGCTCTCTACCACGGTGATGTCCTTCAATATCTGATGGCGGTCACTAAAGTAGTTGAACTGGCCTGGGAGGTCAGTCTTCTGGTAGTAGTACACACGACACATGCAACCTTTTAACCCTGTCCCCCATATGGTTAGGTTGGCATTGCCATCCATATCAGAGGTTACATTCCCATTGGAGACCTGCACATAACTTCTCCATGGCACAAATTCTGGCGAGTCATATGCCAGGCCAACACGATACCACTGTCCTGAAAACTTTGTAGATCAAAGTCCTGTTGTGGATGAATATCAGCATTGATACACTGAGTCCATAGCATCACGCTGAAGACGGTCACCACTAAAAACATGATGAACAAATAGAGAAATACAGACCCTGTTGTGAGACCAAGCAGGTAGAATCAAATAGATAAGTG

Function

NR:

description
lipocalin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU549712 False 744 lncRNA 0.38 2 20923166 20924220
TU549713 True 1211 lncRNA 0.40 6 20923166 20926045

Neighbor

gene id symbol gene type direction distance location
LOC110525447 LOC106585394 coding upstream 56327 20850171 ~ 20866839 (+)
LOC118964873 NA coding upstream 87738 20834000 ~ 20835428 (+)
prlrb LOC106585301 coding upstream 143589 20755954 ~ 20779577 (+)
LOC110525442 LOC106585389 coding upstream 178188 20740426 ~ 20744978 (+)
mrps30 LOC106585386 coding upstream 189196 20730811 ~ 20733970 (+)
LOC110525115 ttc16 coding downstream 13766 20939811 ~ 20946942 (+)
LOC110525116 adamtsl2 coding downstream 36255 20958755 ~ 20984618 (+)
LOC110525452 LOC106585404 coding downstream 84731 21010776 ~ 21014262 (+)
LOC110525453 LOC106580025 coding downstream 88344 21014389 ~ 21019612 (+)
cfap157 cfap157 coding downstream 116987 21043032 ~ 21056547 (+)
G483690 LOC106585396 non-coding upstream 33432 20886907 ~ 20889734 (+)
G483593 NA non-coding upstream 216761 20620100 ~ 20706405 (+)
G483631 NA non-coding upstream 230807 20690848 ~ 20692359 (+)
G483596 NA non-coding upstream 286591 20635375 ~ 20636575 (+)
G483556 LOC106585377 non-coding upstream 352803 20532076 ~ 20570363 (+)
G483767 NA non-coding downstream 74533 21000578 ~ 21000911 (+)
G483778 NA non-coding downstream 98621 21024666 ~ 21025677 (+)
G483779 NA non-coding downstream 101799 21027844 ~ 21028186 (+)
G484479 LOC106585411 non-coding downstream 191507 21117552 ~ 21119475 (+)
G484499 NA non-coding downstream 214767 21140812 ~ 21141171 (+)
G483669 LOC106585393 other upstream 119360 20802776 ~ 20803806 (+)
LOC110525431 LOC106585378 other upstream 320164 20591803 ~ 20603188 (+)
LOC110525429 NA other upstream 386068 20533279 ~ 20537508 (+)
G482551 LOC106585704 other upstream 1663558 19259149 ~ 19259608 (+)
G482000 NA other upstream 2065010 18857627 ~ 18858156 (+)
G484674 NA other downstream 538094 21464139 ~ 21466905 (+)
G484726 NA other downstream 627687 21553732 ~ 21554097 (+)
G485780 NA other downstream 1515271 22441316 ~ 22444619 (+)
G486127 NA other downstream 1748197 22674242 ~ 22674452 (+)

Expression


Co-expression Network