G484501


Basic Information

Item Value
gene id G484501
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 21143513 ~ 21150744 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU550659
ATCGCTATCATTCATGTTTCACTTTCCTCCTACAAGACACCTTACGCCACAAAAACCTTACAGCTAAAGTGCTAACCAGCATTATGAGCAACACAATGGCCAGTAGCGTTGCTACGACGTCAACAGAGTGGTAGTTGAACCAGGACATCTTATAGGACTCTGTCCTCAGATGTGCCGCTCCTTTGTTCCTCATGACAAACTCAATCCAGAACATGGCGCGGTCCAGTGGTTTCATGGGCTGGTCCCTGTGCAGCCTGGATAGTCTCTGCATGTTCTCCCTGTAGGTCGGCTCATAGAGAACAGCCTTCACTGCCTCCAGGAAGATGTCTCTGTCTACGGTGGCGATGTCCACTATTTTAGCCACTCCCTTAGCCCTCATCCTATTGAGGTTGTCTTGCTGGTCGAAGACCAACGGGAGGCCGACAATAGGGACACCATGATAGATGGCCTCCTGGACTCCATTGGTTCCGCCGTGGGCAACAAAGGCTCGGGTCTTGGGGTGTCCAAGGAGGTCGTTCTGGGGGAGCCAATCCACTAGTAAGGTGTTGTTGCCCACGGAGGTGGGTCTCTTCCCAGTGTGCCTCCAGACGATCCTCTGAGGCAGTTTGGCGAAAGCAGCTGCGATGTCCTCAGCGATGTCCTCAGGAAGTTGTCCCACCAAGGTCCCCAGGGACATCATGATGACCCCATGGTCCCCAGACTTCTGGACAAAGTCCTCTATGTCCTGAGGAAGCGGCTTTGAGGGCTTGCACTGGAAACCGCCCATGTAGACCACGTTTGGCATGGTGGGCCGCGGAAACTCAAAGGTAAAGTCATTCCTCATGAGCCATATGTCTGCTGCCTGGAACAATGACATGTAGTGAACGTCAGGGCCGAAGTAACGATGGACGAACGGAATGTAGTTAGGGTCTATGACGTATGCAATTTGAAACCTTGTAAAAAGATAAAACAGAACATTTATGACTCTCTCTTGAAAAGTCATTTTGTCTGTCAACAGTGCTCCTGGCAACGGGACATATGAGAGAGGCGAGGGGGCTATGGCAAAGTGACCCTCGCCCTGGACTGTCCATCGGACATTGAAGACAAGAGGAAGACCAATGCGATGAGCCAAAAACACGCCCCCACCAATGGCAGGATCCGTCAAAACCAGGTCATAGTTTGCATCGCGAAGCGATTGCATTAGTTCGGCATCTTCGAATATCGTAGTCATCATTACGACCAAATCCTTGTGTAACTCATAGAACTGCTTCACCACGTCAAGCTCCAGACTCATACGAGACCAGAAACCTCCACCCTCCCTTTGGATCTGCAATTGTCTGCTCACAAACAAACTAAAGACCTCCTCAACAAATCCACCACCAGATACTGGGATGGTAATGCACGAGTAGTGAGGGGATTTCTCCTTGATGTACCAGTTGGTGGTTGGACGAATCACTGTGATGCTATGGCCTCTGGAGTGCAGCTCTTCGATGAGGACTTTCATATTCACCCAGTGGCTTCCATCCAATGGGAAGACCAGCACGTTCCCCCCATAGACAGTggtgagagagaagagcagaacaGCAACCGTGACCAGGGCTGGTTGATGCATCTCTTAGGTGAATCCAAAAAAAACCAGTCTGCAAGTAGCCTTAAATCCAAAGTGATGTTTGGCCAACCTCCCCTGAACAGCAGTTTGCAAACAGTGAAAGTAGTCCTATGGCTGTGGCTTTGAGCTGGAGTAACCTAACTTATGCTGCCACAACTAATCTGTG
>TU550660
ATCGCTATCATTCATGTTTCACTTTCCTCCTACAAGACACCTTACGCCACAAAAACCTTACAGCTAAAGTGCTAACCAGCATTATGAGCAACACAATGGCCAGTAGCGTTGCTACGACGTCAACAGAGTGGTAGTTGAACCAGGACATCTTATAGGACTCTGTCCTCAGATGTGCCGCTCCTTTGTTCCTCATGACAAACTCAATCCAGAACATGGCGCGGTCCAGTGGTTTCATGGGCTGGTCCCTGTGCAGCCTGGATAGTCTCTGCATGTTCTCCCTGTAGGTCGGCTCATAGAGAACAGCCTTCACTGCCTCCAGGAAGATGTCTCTGTCTACGGTGGCGATGTCCACTATTTTAGCCACTCCCTTAGCCCTCATCCTATTGAGGTTGTCTTGCTGGTCGAAGACCAACGGGAGGCCGACAATAGGGACACCATGATAGATGGCCTCCTGGACTCCATTGGTTCCGCCGTGGGCAACAAAGGCTCGGGTCTTGGGGTGTCCAAGGAGGTCGTTCTGGGGGAGCCAATCCACTAGTAAGGTGTTGTTGCCCACGGAGGTGGGTCTCTTCCCAGTGTGCCTCCAGACGATCCTCTGAGGCAGTTTGGCGAAAGCAGCTGCGATGTCCTCAGCGATGTCCTCAGGAAGTTGTCCCACCAAGGTCCCCAGGGACATCATGATGACCCCATGGTCCCCAGACTTCTGGACAAAGTCCTCTATGTCCTGAGGAAGCGGCTTTGAGGGCTTGCACTGGAAACCGCCCATGTAGACCACGTTTGGCATGGTGGGCCGCGGAAACTCAAAGGTAAAGTCATTCCTCATGAGCCATATGTCTGCTGCCTGGAACAATGACATGTAGTGAACGTCAGGGCCGAAGTAACGATGGACAAACGGAATGTAGTTAGGGTCTATGACGTATGCAAATTGAAACCTTGTAAAAAGATAAAACAGAACATTTATGACTCTCTCTTGAAAAGTCATTTTGTCTGTCAACAGTGCTCCTGGCAACGGGACATATGAGAGAGGCGAGGGGGCGATGGTAAAGTGACCCTCGCCCAGGACTGTCCATCGGACATTGAAGACAAGAGGAAGTCCAATGCGGTGAGCCAGAAACACACCCCCACCAATGGCAGGATCTGTCAAAACCAGGTCATAGTTTGCATCGCGAAGCAATTGCATTAGTTCGGCATCTTCGAATATCGTAGTCATCATTACGACCAAATCCTTGTGTAACTCATAGATCTGCTTCGCTACCTCAAGCTCCAGACTCATACGAGACCAGAAACTTCCACGCTCCCTTTGGATCTGCAATTGTCTGCTCACAAACAAACTAAAGACCTCCTCAACAATTCCACCACCAGATACTGGGATGGTAATGCACGAGTAGTGAGGGGATTTCTCCTTGATGTACCAGTTGGTGGTTGGACGAATCACTGTGATGCTATGGCCTCTGGAGTGCAGCTCTTCGATGAGGACTTTCATATTCACCCAGTGGCTTCCATCCAATGGGAAGACCAGCACGTTCCCCCCATAGACAGTggtgagagagaagagcagaacaGCAACCGTGACCAGGGCTGGTTGATGCATCTCTTAGGTGAATCCTTTGATAAACGATACAAAGGAAGAATAGTTAGTTACAGAGGAACTCCATCTCTTATTTCCTAATAAATAGGTTTGAATTACATTAACATTTTAGtcacttagcagacactcttatccagagtgacttacaagtATTGCATTAGTGCGTT
>TU550663
ATCGCTATCATTCATGTTTCACTTTCCTCCTACAAGACACCTTACGCCACAAAAACCTTACAGCTAAAGTGCTAACCAGCATTATGAGCAACACAATGGCCAGTAGCGTTGCTACGACGTCAACAGAGTGGTAGTTGAACCAGGACATCTTATAGGACTCTGTCCTCAGATGTGCCGCTCCTTTGTTCCTCATGACAAACTCAATCCAGAACATGGCGCGGTCCAGTGGTTTCATGGGCTGGTCCCTGTGCAGCCTGGATAGTCTCTGCATGTTCTCCCTGTAGGTCGGCTCATAGAGAACAGCCTTCACTGCCTCCAGGAAGATGTCTCTGTCTACGGTGGCGATGTCCACTATTTTAGCCACTCCCTTAGCCCTCATCCTATTGAGGTTGTCTTGCTGGTCGAAGACCAACGGGAGGCCGACAATAGGGACACCATGATAGATGGCCTCCTGGACTCCATTGGTTCCGCCGTGGGCAACAAAGGCTCGGGTCTTGGGGTGTCCAAGGAGGTCGTTCTGGGGGAGCCAATCCACTAGTAAGGTGTTGTTGCCCACGGAGGTGGGCCTCTTCCCAGTGTGCCTCCAGACGATCCTCTGAGGCAGTTTGGCGAAAGCAGCTGCGATGTCCTCAGTGATGTCCTCAGGAAGTTGTCCCACCAAGGTCCCCAGGGACATCATGATGACCCCATGGTCCCCGGACTTCTGGACAAAGTCCTCCATGTCCTGAGGAAGCGGCTTCGAGGGCTTGCACTGGAAACCGCCCATGTAGACCACGTTTGGCATGGTGGGCCGCGGAAACTCAAAGGTAAAGTCATTCCTCATGAGCCATATGTCTGCTGCCTGGAACAATGACATGTAGTGAACGTCAGGGCCGAAGTAACGATGGACAAACGGAATGTAGTTAGGGTCTATGACGTATGCAAATTGAAACCTTGTAAAAAGATAAAACAGAACATTTATGACTCTCTCTTGAAAAGTCATTTTGTCTGTCAACAGTGCTCCTGGCAACGGGACATATGAGAGAGGCGAGGGGGCGATGGTAAAGTGACCCTCGCCCAGGACTGTCCATCGGACATTGAAGACAAGAGGAAGTCCAATGCGGTGAGCCAGAAACACACCCCCACCAATGGCAGGATCTGTCAAAACCAGGTCATAGTTTGCATCGCGAAGCAATTGCATTAGTTCGGCATCTTCGAATATCGTAGTCATCATTACGACCAAATCCTTGTGTAACTCATAGATCTGCTTCGCTACCTCAAGCTCCAGACTCATACGAGACCAGAAACTTCCACGCTCCCTTTGGATCTGCAATTGTCTGCTCACAAACAAACTAAAGACCTCCTCAACAATTCCACCACCAGATACTGGGATGGTAATGCACGAGTAGTGAGGGGATTTCTCCTTGATGTACCAGTTGGTGGTTGGACGAATCACTGTGATGCTATGGCCTCTGGAGTGCAGCTCTTCGATGAGGACTTTCATATTCACCCAGTGGCTTCCATCCAATGGGAAGACCAGCACGTTCCCCCCATAGACAGTggtgagagagaagagcagaacaGCAACCGTGACCAGGGCTGGTTGATGCATCTCTTAGGTGAATCCTTTGATAAACGATACAAAGGAAGAATAGTTAGTTACAGAGGAACTCCATCTCTTATTTCCTAATAAATAGGTTTGAATTACATTAACATTTTAGtcacttagcagacactcttatccagagtgacttacaagtATTGCATTAGTGCGTT

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU550659 False 1754 lncRNA 0.50 2 21143513 21147585
TU550660 False 1755 lncRNA 0.49 2 21143513 21150744
TU550663 True 1755 lncRNA 0.49 2 21143513 21150744

Neighbor

gene id symbol gene type direction distance location
LOC110525457 LOC106585409 coding upstream 44945 21062438 ~ 21098568 (+)
cfap157 cfap157 coding upstream 86966 21043032 ~ 21056547 (+)
LOC110525453 LOC106580025 coding upstream 123901 21014389 ~ 21019612 (+)
LOC110525452 LOC106585404 coding upstream 129251 21010776 ~ 21014262 (+)
LOC110525116 adamtsl2 coding upstream 158895 20958755 ~ 20984618 (+)
ptgs1 LOC106585418 coding downstream 60830 21211574 ~ 21272145 (+)
pmpca LOC106585420 coding downstream 167304 21318048 ~ 21330806 (+)
LOC110525469 LOC106585423 coding downstream 241127 21391871 ~ 21444594 (+)
dpp7 dpp7 coding downstream 294484 21445228 ~ 21453374 (+)
LOC110525013 LOC106585433 coding downstream 590300 21741044 ~ 21744737 (+)
G484500 NA non-coding upstream 892 21142227 ~ 21142621 (+)
G484499 NA non-coding upstream 2342 21140812 ~ 21141171 (+)
G484479 LOC106585411 non-coding upstream 24038 21117552 ~ 21119475 (+)
G483779 NA non-coding upstream 115327 21027844 ~ 21028186 (+)
G483778 NA non-coding upstream 117836 21024666 ~ 21025677 (+)
G484506 NA non-coding downstream 11534 21162278 ~ 21214539 (+)
G484603 NA non-coding downstream 160506 21311250 ~ 21311520 (+)
G484604 NA non-coding downstream 161684 21312428 ~ 21312647 (+)
G484615 NA non-coding downstream 180870 21331614 ~ 21332027 (+)
G484616 NA non-coding downstream 181393 21332137 ~ 21332708 (+)
G483669 LOC106585393 other upstream 339707 20802776 ~ 20803806 (+)
LOC110525431 LOC106585378 other upstream 540511 20591803 ~ 20603188 (+)
LOC110525429 NA other upstream 606415 20533279 ~ 20537508 (+)
G482551 LOC106585704 other upstream 1883905 19259149 ~ 19259608 (+)
G484674 NA other downstream 313395 21464139 ~ 21466905 (+)
G484726 NA other downstream 402988 21553732 ~ 21554097 (+)
G485780 NA other downstream 1290572 22441316 ~ 22444619 (+)
G486127 NA other downstream 1523498 22674242 ~ 22674452 (+)
LOC110525518 LOC106585474 other downstream 2039888 23079630 ~ 23197514 (+)

Expression


Co-expression Network