G484674


Basic Information

Item Value
gene id G484674
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 21464139 ~ 21466905 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU550839
TAATTAGTACAGTCCCTTCATTTATTCATACATTTCCGTCTAACAACAAAAGTACTATTATCTCTGGGGCACAATACAAAACATGAGAATATGAATGATTGCTATTTATTCAAACTTAAaaagaaaaacaacaaagaaaatgGCCAGCATATAAATTAAGTAAATCACACAATTAAATACATATCTTGAAACAAAGATGAAACTGAAGAAAAACGTAaaaacacattattattttttttacagtactGCATTGTTCCTCTGTATCAACAGAAATCAAAACATCACAATTTCACAAATGGTAGAAATGGTGATTAGGTTACTGCATCTATCAGGTGATGCAATAATGCATACAATATTATCACCAGACAGAATTCATTGTCATAGTTCCTAATAATAGTCAAAACCAAGGGATCAATATTGGAATGTTTCTTAGTTTCTAACTGCAGATGTAagggtatagtgtgtatataatgaCGTAGAGTGAGCACGGAGCTCATAAAATAGAGATTTTAGCTATGTCTCCAATTTGGGACACATTGTTAAATTGCAGCAGTGAAGGTTAATGTGTAAACCACAGTGCTCTTCATCAAAAACATACCTGAATTAAGAATGGGTAACGTGAAAAAATAATTATAGCAACCTTTAGCATTTAAAGAAACCTCGGTCATTTAAACCAATTACATAAATAAGCATGTTTCAATATCACCAGTGAAATCAGTGTAAACTAAAATACAAAGATAATTTCTCTCAAGAATATCACTGGCCTCTGAAAATGGATAGACTAACCAGTTCATATTTGTAACTGGTCAACCTTTGGATAGAGAAGAGACACTTTTTCCTGTTGGTTGGTACGTCTACTTTGTCTTAGCAATAAACAAGAATGtcatgagaagaggagagatgctgaTGTCTTTCTCTGTATCTGTTTCTCTGGGTCATTTCCCCACTGGCTGGTGGTTGTCTCATTGTTGTCTCTGCTTTTATCAGTCCTTAGAGAGTGTCTCTCTTCCTTTAGCTGAAGCACACAGGCCCAACAGTGAATCCAAACTCCTGTGTGAGGTCACTGCTGCCGAACACTGCCAGATCTCTCAGGGGAAGCAGATCCAAGTCCTCACTCTCAAACTGGAACACCGCCTCACGACGGCCTCCGGAATGCAGCTCCTCAGAGGGCTGCCAAGTGAAACACAAAGGACATTAAGGATTGAAGTGACTCTCTTCACCATCTCTCAACAGCCTTCCCTCCTCACCACCACCATAATCTAATACAGTACATGGAACTTCACCTCTCTTTCGCCTGGTCCCTGTATGTTCCCAGGCTGGCAGGAGTAGGTGATGTTCTGACTGGTGAGCCTGCTGTTCAACCTCAGGAATCTCATCTGCACCACATCGGGTCCTAGATACTCAAACTGGGAGAGGGCATGGAAGGAAGGAAATCAAACCAGAAACACAAAAGCATTTCATTGTACTGTGTACACCACATGTATCCTTTGCATCCTTTGTATCCtttacaaataaactttgatttgattcgatttgagaATCATGATTGGATTTGAGGCTTACCTGAAAGCCTTTTTCCTTTGAACTCAACCAATGAAATGAGTTATTTGTCCCAGAATCCTTCAGCCATGCTTTTACTGGCACCTGAAGTTCGAATGTATTTCATATGTTATTACAAACATTTAGCATATGTTATTACCATATTATATAAGATCTATGGTTCAGTGGGTCCCAGAGCCAGAAGTGTGTGTGCAAGTACCTGAGGCTGCAGCGGAGACAGACAGGTCTTTGGTGCTGCAGTGAAGTCACAGTACACCAGAAGGGCATCAGCTGGGCTGCCCTGGTTAGGATCAATGTAATACATCCCTGGAACATGTAACAACCTTTACATCAGAAACTGAGCAGGGTTCCATCTCTCTGCTGCTGTACAACCGCTCACACACAAATCCAATATGCATATTGTACATTTAAGATGCTTTGAAATATCTGATACCAATATTGTGGTATTAGAATATAACAGAGAAGTCTTCACATTGTGGAAGAAGCCCATACCGTTAGTGAAGTTGGGCTGGGAGAGCCAGAGCTCCAAGCAGGTGGTAGCCGGGTGTTCTTTGGTGCCGTCTGGTGGATCTATGAGCAAGTGCAGTTCTTGGTGCAATAAATCCAGCAGAGTCTGGATCAGGAGGTAGTTGGGCTTGTCTGACAGGTACATGAGGTCCTGATCAGACAGGGGGTGAAACAAGGAGGTGTTGTAATATAAATAGTTATGGCTAAATTTGCTGAAATGGCTTTAGTTTCAAAATGGAAGTATTTATATGTGCTTGGATAGATTACCAACGACTTGCCTTGAGTTGTgccagagagagattcagagaggtTCCAGGGGGGCCAGGAGGTCCAGGGAGGCCCTGACATAAATAAGGAAAAACAAACACAATATCTAAGTTAATCTCATTGCCCTGGGTTGCCAGATTGGGTCAGGAATTATTTTGATTTCATTAAACAGATGTAAAGTGTCTGCTACTGTAATGTTTTGTGATGTGAGTAGGGTCATACTCACAGGCAAGCCTCTCACTCCAACAGGACCTGCTGTTCCAGCAAATCCTTTTAGACCCTGACAATTAGGCAAATTTAGTCAGTGCCCTCAGTCAATCCCCCAATCTCCAAATAATTCATTGACAAGAC

Function

NR:

description
collagen alpha-1(I) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU550839 True 2685 TUCP 0.41 2 21464139 21466905

Neighbor

gene id symbol gene type direction distance location
dpp7 dpp7 coding upstream 10765 21445228 ~ 21453374 (+)
LOC110525469 LOC106585423 coding upstream 19545 21391871 ~ 21444594 (+)
pmpca LOC106585420 coding upstream 133333 21318048 ~ 21330806 (+)
ptgs1 LOC106585418 coding upstream 191994 21211574 ~ 21272145 (+)
LOC110525457 LOC106585409 coding upstream 365571 21062438 ~ 21098568 (+)
LOC110525013 LOC106585433 coding downstream 274139 21741044 ~ 21744737 (+)
fgf17 LOC106585328 coding downstream 345462 21812367 ~ 21818773 (+)
fkbp15b LOC106585435 coding downstream 366672 21833192 ~ 21847552 (+)
LOC110525481 LOC106585436 coding downstream 380945 21847850 ~ 21852139 (+)
ccn1l2 LOC106585437 coding downstream 387259 21854164 ~ 21863431 (+)
G484641 NA non-coding upstream 76698 21387157 ~ 21387441 (+)
G484639 NA non-coding upstream 78544 21385247 ~ 21385595 (+)
G484619 NA non-coding upstream 105622 21357776 ~ 21358517 (+)
G484570 NA non-coding upstream 112342 21351586 ~ 21351797 (+)
G484616 NA non-coding upstream 131431 21332137 ~ 21332708 (+)
G485043 NA non-coding downstream 242691 21709596 ~ 21709805 (+)
G485121 NA non-coding downstream 344812 21811717 ~ 21811925 (+)
G485129 NA non-coding downstream 359127 21826032 ~ 21826326 (+)
G485093 NA non-coding downstream 360721 21827626 ~ 21828343 (+)
G485092 NA non-coding downstream 361835 21828740 ~ 21831681 (+)
LOC110525116 adamtsl2 other upstream 500813 20958755 ~ 20984618 (+)
G483669 LOC106585393 other upstream 660333 20802776 ~ 20803806 (+)
LOC110525431 LOC106585378 other upstream 861137 20591803 ~ 20603188 (+)
LOC110525429 NA other upstream 927041 20533279 ~ 20537508 (+)
G482551 LOC106585704 other upstream 2204531 19259149 ~ 19259608 (+)
G484726 NA other downstream 86827 21553732 ~ 21554097 (+)
G485780 NA other downstream 974411 22441316 ~ 22444619 (+)
G486127 NA other downstream 1207337 22674242 ~ 22674452 (+)
LOC110525518 LOC106585474 other downstream 1723727 23079630 ~ 23197514 (+)
G487078 LOC106585486 other downstream 2061835 23528740 ~ 23531799 (+)

Expression


Co-expression Network