XLOC_024168 (cadps2)


Basic Information

Item Value
gene id XLOC_024168
gene name cadps2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 28158352 ~ 28269953 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047913
gGTTGGTTCAGCCCAGGCCAGGTGTTTGTTTTGGATGAGTACTGTGCTAGATATGGAGTGCGGGGCTGCCATCGTCACCTCTGCTACCTGAAAGACCTGATGGATTTCTCGGATAACAACGCCCTGGTGGATCCCACACTCCTACATTATAGTTACGCCTTCTGTGCCTCACACGTCCACGGAAACAGACCTGACGGCATGGGCACAGTTACAGAACGAGAGAAGGAGGAGTTTGAGGAGATCAGGAGCAGATTGTTGACTTTACTGGAGAAGCAGATCACACATTTCAGGTACTGTTTCCCCTTTGGCCGACCGGAGGGGGCTCTTAAAGCCACGCTCTCTCTTCTTGAAAGGGTTCTGATGAAAGACATCACCACAGCGGTCCCACCTGAAGAGATGCGTAAGATTGTGCAGAAGTGCCTGGAACAAGCTGCGCTCATCAATTACTCCCAGCTCACCGAATACGCCCAGATTGAAGATAACAGCCAAGCATCTCCAGAGAAAAAACTGGAGGACATGATCCGCCTGGGAGAACTGTGTATGGAAGTGTTACAGCAGAATGATGAGCATCACTCTGAGGCCTTCTCCTGGTGGCCAGAGGCGATGGCTGAGCATGCAGAAATCTTTCTCTCACTCTACACAGTGGACATGGATGCAGCATTGGCTGTACAACAGCAAGACTCCTGGGACAGTTTTCCCCTATTTCAGCTGCTCAATAACTTCCTCCGGACTGACCCTCACCTGTGCAATGGGACATTCCATAAGCACCTGCAGGACCTTTACAGCCCTCTGGTGGTGCGTTACATTGACCTGATGGAGTCGTCCATCGCTCAGTCCATTCATCGTGGTTTTGAACAGGAGACATGGCAGTCTGTGAAGACCATCACCAACAATCTGCCAAGCGTTCCTCTGCCCAGGGTTCCCAACCTGCCTCTTAACCTCCCTCAGATGCCCAGCTTCTCAGCCCCGTCCTGGATGGGGCCGCTGTGTGACAGCACGTGTCATGTGAATGTTTCTGTCTTCTCCAGTAATGGTTCGGCCACATCAGAAGATCTGTTTTGGAAGCTGGATGCTCTTCAGATGTTCGTCATGGACCTGCATTGGCCAGAGCCAGAGTTTGCCAAACATCTGGAGCAGAGGCTTAAACTGATGGCTAGCGACATGATGGAGGCCTGTGTCAAAAGGACCAAAGCTGCTTTTGACTCAAAAATGCAGAAGTCTTGCAAGTCCACAGATTTCCGCGTCGCCTTGTCTGTGTGCACAATGTTCAATGTTCTCATGGATGCCAAGAAGCAGTGCTCCAAGCTTTGTGTTCTTGACCAAGGTCAGGAGGTTGACCAACAGTGGCAGCAGTACCACTCCAAAATCGATGTCCTGATCGATGAGGCCTTTAAGGAAATGATCTCCTCCTTGGTCTCGAAGtttgCAGCTGTTTTAGATGGGGTGTTGTCGAAACTGTCACGATACGACGAGGGAACATTCTTCTCCTCCATCCTGTCTTTCACGAAACCTGGTATGGATCTAGCAGATACCTACATCACTTTTGTAAGGCAGAACCAGGACATTCTGCGAGACCGTGTGAATGACGAGATGTACACTGAGAAAATCTTTGACCAATGGTACACCTCTTTCATGAAGGCGGTGTGCGTCTGGCTGACGGACAGACTCGACCAGCAGCTGCATGTTTACCAACTCAAGACTCTCATCAAGATTGTCAAGAAGTCGTACCGTGACTTCAGGCTGCAGGGTGTACTAGATGGCACATTGAACAACAAGAGCTATGAAACCGTTTACAGCCGGCTCACTATCGAGGAAGCCACGGCAGCCGTATCGGCCACTGATGGTCTGCAGGGCATCACCATGAGGGACAGCGATGAAGAGGAGGGTTAATGTCCCACCTACATGGACGGTCATAAACTCGATACAAAGAGGTCGGATTCCAGCTCTCCTGATTGGAGCTCACACTTCATGCTCCCCAGCCAGTGCCACACTGCCCACTTGTCTAAGCCGGTGTCACCATGCTTGTATAAAACTCTCATTGGCCACTTCCAGACAGCTAAAGTATCTCTGTCGTTGTGTATTTGATGTGCAGTGGCTCATCGCAAGGCAAGTTCCAATAGTGGGAAGCACTCGCAGGCACAAATTCACACACAAAGGAGCAGCTGATGATTTGTAAGTGTATCATAGACATGGTGTACCTGAGTGAACGCTAGAAATGCAGAGCTGGAGAAAAAGTAGCATCCGCTtatgtgctgtttttgttttttttgttttgtattagcTTGGGATCCTCAGGTCAAAGCTTCAGATATGGTGGATGAAATGCTAGCTGTTCACTGTTATTTGATGAAGTTGTGACACTGTTCCACTCAATAGCTATGAATTCACATTCAGATTCTTCTGTAGAAGTAACCGTTGAGTGTGTTATGTATAGTATgctgtcaatgtccaaatatgtTTCAGATGAAAGATGTCATTGGATTTTAATAAGAGCTGTATATTTCTATTGTCTTTGTGCACCTGAGGTTGCCCAGGTGTGTTGAGTGTTacaattaaagtgtttttaatgtcA
>TCONS_00047914
CACATCAGAAGATCTGTTTTGGAAGCTGGATGCTCTTCAGATGTTCGTCATGGACCTGCATTGGCCAGAGCCAGAGTTTGCCAAACATCTGGAGCAGAGGCTTAAACTGATGGCTAGCGACATGATGGAGGCCTGTGTCAAAAGGACCAAAGCTGCTTTTGACTCAAAAATGCAGAAGTCTTGCAAGTCCACAGATTTCCGCGTCGCCTTGTCTGTGTGCACAATGTTCAATGTTCTCATGGATGCCAAGAAGCAGTGCTCCAAGCTTTGTGTTCTTGACCAAGCAGTACCACTCCAAAATCGATGTCCTGATCGATGAGGCCTTTAAGGAAATGATCTCCTCCTTGGTCTCGAAGtttgCAGCTGTTTTAGATGGGGTGTTGTCGAAACTGTCACGATACGACGAGGGAACATTCTTCTCCTCCATCCTGTCTTTCACGAAACCTGGTATGGATCTAGCAGATACCTACATCACTTTTGTAAGGCAGAACCAGGACATTCTGCGAGACCGTGTGAATGACGAGATGTACACTGAGAAA
>TCONS_00047915
AAATGGCGGATTAATTGAATGTAGTGTGAGCCTTTGGTCGCCGCAGCTGGACGGGTTCTTTAGAAAAACACAAGGCTGCCCTAATTGTGGCCCGCACAAAAAAGTATCCTTCAAATTCCTTTGCCCTAAACGAGAACAGGAATGCCATTCATTGGCATAATAGGCCTAATAGCTGCTTAACTCAGCCCTATTGCACAGGGAGGATTTTTCCCTCTCCCGAAATATGTCTTTGTGAGGGTGTTGTTCTTTTAGGATTGCCTCGCGTTGATCCACGTTTAGCCATGGTGTTTGTTGATGTTTCTCCTTTTCTTGTCCCGCAGCAGCAGTACCACTCCAAAATCGATGTCCTGATCGATGAGGCCTTTAAGGAAATGATCTCCTCCTTGGTCTCGAAGtttgCAGCTGTTTTAGATGGGGTGTTGTCGAAACTGTCACGATACGACGAGGGAACATTCTTCTCCTCCATCCTGTCTTTCACGAAACCTGGTATGGATCTAGCAGATACCTACATCACTTTTGTAAGGCAGAACCAGGACATTCTGCGAGACCGTGTGAATGACGAGATGTACACTGAGAAAATCTTTGACCAATGGTACACCTCTTTCATGAAGGCGGTGTGCGTCTGGCTGACGGACAGACTCGACCAGCAGCTGCATGTTTACCAACTCAAGACTCTCATCAAGATTGTCAAGAAGTCGTACCGTGACTTCAGGCTGCAGGGTGTACTAGATGGCACATTGAACAACAAGAGCTATGAA
>TCONS_00047916
AGCTGTTTTAGATGGGGTGTTGTCGAAACTGTCACGATACGACGAGGGAACATTCTTCTCCTCCATCCTGTCTTTCACGgtaaaagcAGCAGCCAAATATGTGGACGTCCCAAAACCTGGTATGGATCTAGCAGATACCTACATCACTTTTGTAAGGCAGAACCAGGACATTCTGCGAGACCGTGTGAATGACGAGATGTACACTGAGAAAATCTTTGACCAATGGTACACCTCTTTCATGAAGGCGGTGTGCGTCTGGCTGACGGACAGACTCGACCAGCAGCTGCATGTTTACCAACTCAAGACTCTCATCAAGATTGTCAAGAAGTCGTACCGTGACTTCAGGCTGCAGGGTGTACTAGATGGCACATTGAACAACAAGAGCTATGAAACCGTTTACAGCCGGCTCACTATCGAGGAAGCCACGGCAGCCGTATCGGCCACTGATGGTCTGCAGGGCATCACCATGAGGGACAGCGATGAAGAGGAGGGTTAATGTCCCACCTACATGGACGGTCATAAACTCGATACAAAGAGGTCGGATTCCAGCTCTCCTGATTGGAGCTCACACTTCATGCTCCCCAGCCAGTGCCACACTGCCCACTTGTCTAAGCCGGTGTCACCATGCTTGTATAAAACTCTCATTGGCCACTTCCAGACAGCTAAAGTATCTCTGTCGTTGTGTATTTGATGTGCAGTGGCTCATCGCAAGGCAAGTTCCAATAGTGGGAAGCACTCGCAGGCACAAATTCACACACAAAGGAGCAGC

Function

symbol description
cadps2 Predicted to enable metal ion binding activity. Predicted to be involved in exocytosis and positive regulation of exocytosis. Predicted to act upstream of or within dense core granule exocytosis and synaptic vesicle exocytosis. Predicted to be active in glutamatergic synapse. Is expressed in hatching gland; nervous system; otic vesicle; pronephric duct; and trigeminal placode. Orthologous to human CADPS2 (calcium dependent secretion activator 2).

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0016079 synaptic vesicle exocytosis biological_process
GO:1990504 dense core granule exocytosis biological_process
GO:0045921 positive regulation of exocytosis biological_process
GO:0098978 glutamatergic synapse cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030903-1 Predicted to enable metal ion binding activity. Predicted to be involved in exocytosis and positive regulation of exocytosis. Predicted to act upstream of or within dense core granule exocytosis and synaptic vesicle exocytosis. Predicted to be active in glutamatergic synapse. Is expressed in hatching gland; nervous system; otic vesicle; pronephric duct; and trigeminal placode. Orthologous to human CADPS2 (calcium dependent secretion activator 2).

Ensembl:

ensembl_id ENSDARG00000013312

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047913 False 2572 mRNA 0.48 16 28158352 28269953
TCONS_00047914 False 539 nonsense_mediated_decay 0.47 5 28240091 28266624
TCONS_00047915 False 758 lncRNA 0.47 5 28253231 28269166
TCONS_00047916 True 769 mRNA 0.50 5 28253844 28269544

Neighbor

gene id symbol gene type direction distance location
XLOC_024166 cadps2 coding upstream 18775 27937585 ~ 28139577 (+)
XLOC_024167 BX322610.1 coding upstream 196958 27961280 ~ 27961394 (+)
XLOC_024165 slc13a1 coding upstream 225629 27923846 ~ 27932723 (+)
XLOC_024164 iqub coding upstream 245979 27873671 ~ 27912373 (+)
XLOC_024163 wasla coding upstream 345542 27744293 ~ 27812810 (+)
XLOC_024169 fezf1 coding downstream 2955 28272908 ~ 28276091 (+)
XLOC_024170 aass coding downstream 9624 28279577 ~ 28336106 (+)
XLOC_024171 CR752641.1 coding downstream 31371 28301324 ~ 28301448 (+)
XLOC_024172 CR356235.1 coding downstream 233897 28503850 ~ 28503965 (+)
XLOC_024173 SLC15A5 coding downstream 285631 28555584 ~ 28579761 (+)
XLOC_023973 CR762411.1 misc upstream 12940243 15217824 ~ 15218109 (+)
XLOC_024162 CR354392.1 non-coding upstream 541298 27616938 ~ 27617054 (+)
XLOC_024159 CR933757.1 non-coding upstream 1005605 27152633 ~ 27152747 (+)
XLOC_024158 CR762471.1 non-coding upstream 1074908 27083330 ~ 27083444 (+)
XLOC_024156 NA non-coding upstream 1245078 26895253 ~ 26913274 (+)
XLOC_024177 CR382363.1 non-coding downstream 543204 28813157 ~ 28815574 (+)
XLOC_024181 BX323444.2 non-coding downstream 671629 28941582 ~ 28957144 (+)
XLOC_024182 NA non-coding downstream 691284 28961237 ~ 28961623 (+)

Expression


Co-expression Network