G485539


Basic Information

Item Value
gene id G485539
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22120182 ~ 22120434 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU551833
agttgagaacaagttctcatttacaactgcgacctggccaagataaagcaaagcagtgcgacaaaaacaacaacacagagttacacatgggataaacaaacgtacagtcaataacacaatagaaaaagtctatgtacagtgtgtgcaaatgtagtaagattagggaggtaaggcaataaataggccataaagGCGAAATAATCAAAATTTAGCAATAACACTGgattgatagatgtgcaagtagagatacagg

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU551833 True 253 lncRNA 0.37 1 22120182 22120434

Neighbor

gene id symbol gene type direction distance location
LOC110525487 LOC106585441 coding upstream 15078 22097493 ~ 22105104 (+)
LOC110525486 LOC106585440 coding upstream 169982 21929133 ~ 21950200 (+)
bcl2l16 LOC106585329 coding upstream 229185 21888990 ~ 21890997 (+)
si:dkey-90l8.3 LOC106585438 coding upstream 250111 21865879 ~ 21870071 (+)
ccn1l2 LOC106585437 coding upstream 256751 21854164 ~ 21863431 (+)
adgrd2 LOC106585442 coding downstream 74989 22195423 ~ 22214704 (+)
LOC110525489 olm2a coding downstream 259842 22380276 ~ 22395072 (+)
LOC110525496 LOC106585447 coding downstream 346051 22466485 ~ 22507759 (+)
LOC110525121 NA coding downstream 387613 22508047 ~ 22511597 (+)
LOC110525015 LOC106585332 coding downstream 406333 22526767 ~ 22528403 (+)
G485530 NA non-coding upstream 5959 22114011 ~ 22114223 (+)
G485490 NA non-coding upstream 45359 22074556 ~ 22074823 (+)
G485488 NA non-coding upstream 48148 22071777 ~ 22072034 (+)
G485451 NA non-coding upstream 84075 22035810 ~ 22036107 (+)
G485440 NA non-coding upstream 97551 22022408 ~ 22022631 (+)
G485583 NA non-coding downstream 34919 22155353 ~ 22155736 (+)
G485593 NA non-coding downstream 44839 22165273 ~ 22165491 (+)
G485597 NA non-coding downstream 49227 22169661 ~ 22170015 (+)
G485603 NA non-coding downstream 57141 22177575 ~ 22177988 (+)
G485613 NA non-coding downstream 72396 22192830 ~ 22193069 (+)
G484726 NA other upstream 566085 21553732 ~ 21554097 (+)
G484674 NA other upstream 653277 21464139 ~ 21466905 (+)
LOC110525116 adamtsl2 other upstream 1156856 20958755 ~ 20984618 (+)
G483669 LOC106585393 other upstream 1316376 20802776 ~ 20803806 (+)
LOC110525431 LOC106585378 other upstream 1517180 20591803 ~ 20603188 (+)
G485780 NA other downstream 320882 22441316 ~ 22444619 (+)
G486127 NA other downstream 553808 22674242 ~ 22674452 (+)
LOC110525518 LOC106585474 other downstream 1070198 23079630 ~ 23197514 (+)
G487078 LOC106585486 other downstream 1408306 23528740 ~ 23531799 (+)
G487146 LOC106585492 other downstream 1532686 23653120 ~ 23667927 (+)

Expression


Co-expression Network