G486115 (LOC106585459)


Basic Information

Item Value
gene id G486115
gene name LOC106585459
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22732364 ~ 22732608 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU552468
TGGTCCTTGAAGGCTGCGTCGACATCACTGGGGATGCCACGCCAGTCCTGCATGTTGCGAGGGTAGATAGAGTCGACGCGGTTCTCCTTGGGGCTAAACCTCCAGTAGCTGCCTgacttgaataagtaggtgttgtAGTTGTTGTCCTGGCCCCAGAGCAGAGCTGCCTGGATGTGGGAGACTGACAGGCCAAGGCTCTGCACAGAGTCTGGCCCTGTGATCTGTCTCTCTGCATCAAACACCCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU552468 True 245 lncRNA 0.56 1 22732364 22732608

Neighbor

gene id symbol gene type direction distance location
LOC110525510 LOC106585458 coding upstream 5201 22721634 ~ 22727163 (+)
LOC110525507 LOC106585456 coding upstream 11037 22692800 ~ 22721327 (+)
LOC110525503 LOC106585452 coding upstream 75981 22646328 ~ 22656383 (+)
LOC110525504 LOC106585454 coding upstream 87471 22640897 ~ 22644893 (+)
LOC110525502 zdh12 coding upstream 104340 22626044 ~ 22628024 (+)
gstt1a LOC106585460 coding downstream 21661 22754269 ~ 22757520 (+)
LOC110525512 LOC106585461 coding downstream 26833 22759441 ~ 22766009 (+)
LOC110525516 LOC106585462 coding downstream 44318 22776022 ~ 22781759 (+)
LOC118964854 LOC106585477 coding downstream 78113 22810721 ~ 22814092 (+)
LOC118964852 LOC106585477 coding downstream 85716 22818324 ~ 22823007 (+)
G486111 NA non-coding upstream 161 22730990 ~ 22732203 (+)
G486129 NA non-coding upstream 53333 22678812 ~ 22679031 (+)
G486125 NA non-coding upstream 60277 22671751 ~ 22672087 (+)
LOC110525499 LOC106585451 non-coding upstream 106494 22617119 ~ 22625917 (+)
G486069 NA non-coding upstream 142403 22589758 ~ 22589961 (+)
G486141 LOC103361053 non-coding downstream 92 22732700 ~ 22733291 (+)
G486142 LOC106585459 non-coding downstream 865 22733473 ~ 22734215 (+)
G486143 LOC106585459 non-coding downstream 2517 22735125 ~ 22735385 (+)
G486147 LOC106582599 non-coding downstream 7088 22739696 ~ 22739927 (+)
G486150 NA non-coding downstream 11228 22743836 ~ 22744437 (+)
G486127 NA other upstream 57912 22674242 ~ 22674452 (+)
G485780 NA other upstream 287745 22441316 ~ 22444619 (+)
G484726 NA other upstream 1178267 21553732 ~ 21554097 (+)
G484674 NA other upstream 1265459 21464139 ~ 21466905 (+)
LOC110525116 adamtsl2 other upstream 1769038 20958755 ~ 20984618 (+)
LOC110525518 LOC106585474 other downstream 458024 23079630 ~ 23197514 (+)
G487078 LOC106585486 other downstream 796132 23528740 ~ 23531799 (+)
G487146 LOC106585492 other downstream 920512 23653120 ~ 23667927 (+)
LOC110525563 LOC106585507 other downstream 1179213 23911741 ~ 23914297 (+)
G488049 NA other downstream 1847353 24579961 ~ 24586313 (+)

Expression


Co-expression Network