G486147 (LOC106582599)


Basic Information

Item Value
gene id G486147
gene name LOC106582599
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22739696 ~ 22739927 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU552506
GATCACAGTGAGGTACAGCTACCCGCTGCCACTCATCGCCAGTGTGatcgagtcaatgcacggggcgcgcttcttcacaaaattggatctcaggagcgcttacaacctggtgcgtatccgggagggggccgagtggaagacggcttttagtaccacctcagggcactatgagtacctcgtcatgccgtacgggttgatgaatgctccatcagtcttccaggcctttgttGAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU552506 True 232 lncRNA 0.56 1 22739696 22739927

Neighbor

gene id symbol gene type direction distance location
LOC110525510 LOC106585458 coding upstream 12533 22721634 ~ 22727163 (+)
LOC110525507 LOC106585456 coding upstream 18369 22692800 ~ 22721327 (+)
LOC110525503 LOC106585452 coding upstream 83313 22646328 ~ 22656383 (+)
LOC110525504 LOC106585454 coding upstream 94803 22640897 ~ 22644893 (+)
LOC110525502 zdh12 coding upstream 111672 22626044 ~ 22628024 (+)
gstt1a LOC106585460 coding downstream 14342 22754269 ~ 22757520 (+)
LOC110525512 LOC106585461 coding downstream 19514 22759441 ~ 22766009 (+)
LOC110525516 LOC106585462 coding downstream 36999 22776022 ~ 22781759 (+)
LOC118964854 LOC106585477 coding downstream 70794 22810721 ~ 22814092 (+)
LOC118964852 LOC106585477 coding downstream 78397 22818324 ~ 22823007 (+)
G486143 LOC106585459 non-coding upstream 4311 22735125 ~ 22735385 (+)
G486142 LOC106585459 non-coding upstream 5481 22733473 ~ 22734215 (+)
G486141 LOC103361053 non-coding upstream 6405 22732700 ~ 22733291 (+)
G486115 LOC106585459 non-coding upstream 7088 22732364 ~ 22732608 (+)
G486111 NA non-coding upstream 7493 22730990 ~ 22732203 (+)
G486150 NA non-coding downstream 3909 22743836 ~ 22744437 (+)
G486151 NA non-coding downstream 4725 22744652 ~ 22745017 (+)
G486154 NA non-coding downstream 6335 22746262 ~ 22746670 (+)
G486159 NA non-coding downstream 10986 22750913 ~ 22751124 (+)
G486127 NA other upstream 65244 22674242 ~ 22674452 (+)
G485780 NA other upstream 295077 22441316 ~ 22444619 (+)
G484726 NA other upstream 1185599 21553732 ~ 21554097 (+)
G484674 NA other upstream 1272791 21464139 ~ 21466905 (+)
LOC110525116 adamtsl2 other upstream 1776370 20958755 ~ 20984618 (+)
LOC110525518 LOC106585474 other downstream 450705 23079630 ~ 23197514 (+)
G487078 LOC106585486 other downstream 788813 23528740 ~ 23531799 (+)
G487146 LOC106585492 other downstream 913193 23653120 ~ 23667927 (+)
LOC110525563 LOC106585507 other downstream 1171894 23911741 ~ 23914297 (+)
G488049 NA other downstream 1840034 24579961 ~ 24586313 (+)

Expression


Co-expression Network