G486154


Basic Information

Item Value
gene id G486154
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22746262 ~ 22746670 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU552513
GGCGTCGCTTTGTAGCTGATTGCTTCGGGCACTGGCGAACAATGCATGCTTCGGAGGCATTGCAGCGTAAAGACGCAAGATAGGACAGAAGTCtgcatcattatcatcatctttTTGACCCGTGGACAGCTCTTTCTTCAGCTCTCTCTTCAGCTGAAGAGTGACGGCGCAGCTTCTTGTGGGCTCTTATATAGGTTCTGATTCTTTCTTCTTTCTTCAGCTCTCTCTTCAGCCGAAGAGTGACGGCGCAGCTTCTTGTGGGCTCTTATATAGGTTCTGATTCTTTCTTCTTTCTTCAAATACG
>TU552515
GGCGTCGCTTTGTAGCTGATTGCTTCGGGCACTGGCGAACAATGCATGCTTCGGAGGCATTGCAGCGTAAAGACGCAAGATAGGACAGAAGTCtgcatcattatcatcatctttTTGACCCGTGGACAGCTCTTTCTTCAGCTCTCTCTTCAGCTGAAGAGTGACGGCGCAGCTTCTTGTGGGCTCTTATATAGGTTCTGATTCTTTCTTCTTTCTTCAGCTCTCTCTTCAGCCGAAGAGTGACGGCGCAGCTTCTTGTGGGCTCTTATATAGGTTCTGATTCTTTCTTCTTTCTTCAAATACGCGTTTTACAGTCTGGACTCTGGAGTGATAATACCACCCGCAACAACGTAACATTTAACCCATTTTGTGCTGCGCTAACATGGATTTTTTGGGATTCAAAACGGAT

Function

NR:

description
stromelysin-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU552513 False 304 lncRNA 0.47 1 22746262 22746565
TU552515 True 409 lncRNA 0.46 1 22746262 22746670

Neighbor

gene id symbol gene type direction distance location
LOC110525510 LOC106585458 coding upstream 19099 22721634 ~ 22727163 (+)
LOC110525507 LOC106585456 coding upstream 24935 22692800 ~ 22721327 (+)
LOC110525503 LOC106585452 coding upstream 89879 22646328 ~ 22656383 (+)
LOC110525504 LOC106585454 coding upstream 101369 22640897 ~ 22644893 (+)
LOC110525502 zdh12 coding upstream 118238 22626044 ~ 22628024 (+)
gstt1a LOC106585460 coding downstream 7599 22754269 ~ 22757520 (+)
LOC110525512 LOC106585461 coding downstream 12771 22759441 ~ 22766009 (+)
LOC110525516 LOC106585462 coding downstream 30256 22776022 ~ 22781759 (+)
LOC118964854 LOC106585477 coding downstream 64051 22810721 ~ 22814092 (+)
LOC118964852 LOC106585477 coding downstream 71654 22818324 ~ 22823007 (+)
G486151 NA non-coding upstream 1245 22744652 ~ 22745017 (+)
G486150 NA non-coding upstream 1825 22743836 ~ 22744437 (+)
G486147 LOC106582599 non-coding upstream 6335 22739696 ~ 22739927 (+)
G486143 LOC106585459 non-coding upstream 10877 22735125 ~ 22735385 (+)
G486142 LOC106585459 non-coding upstream 12047 22733473 ~ 22734215 (+)
G486159 NA non-coding downstream 4243 22750913 ~ 22751124 (+)
G486246 NA non-coding downstream 205983 22952653 ~ 22953950 (+)
G486313 LOC105902522 non-coding downstream 314319 23060989 ~ 23062352 (+)
G486312 LOC107567955 non-coding downstream 316066 23062736 ~ 23064014 (+)
G486127 NA other upstream 71810 22674242 ~ 22674452 (+)
G485780 NA other upstream 301643 22441316 ~ 22444619 (+)
G484726 NA other upstream 1192165 21553732 ~ 21554097 (+)
G484674 NA other upstream 1279357 21464139 ~ 21466905 (+)
LOC110525116 adamtsl2 other upstream 1782936 20958755 ~ 20984618 (+)
LOC110525518 LOC106585474 other downstream 443962 23079630 ~ 23197514 (+)
G487078 LOC106585486 other downstream 782070 23528740 ~ 23531799 (+)
G487146 LOC106585492 other downstream 906450 23653120 ~ 23667927 (+)
LOC110525563 LOC106585507 other downstream 1165151 23911741 ~ 23914297 (+)
G488049 NA other downstream 1833291 24579961 ~ 24586313 (+)

Expression


Co-expression Network