G486473


Basic Information

Item Value
gene id G486473
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23394964 ~ 23396253 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU552899
atgaatttatttgcaaattatggtggaaaataagtatttggtcacctacaaacaagcaagatttctggctctcaaagacctgtaacttcttctttaagaggctcctctgtcctccactcgttacctgtattaatggcacctgtttgaacttcttatcagtataaaagacacctgcccacaacctcaaacagtcacactccaaactccactatggccaagaccaaagagctgtcaaaggacaccagaaacaaaattgtagacctgcaccaggctgggaagactgaatctgcaataggtaagcagcttggttgaagaaatcaactgtgggagcaattattaggaaatggaagacatacaagaccactgataatctccctcgatctaggGCTGCactcaagatctcaccccgtggggtcaaaatgatcacaagaacggtgagcaaaaatccctgaaccacacggggggacctagtgaatgacctgcagagagctgggaccaaagtagcaaagcctaccatcagtaacgcactacgccgccagggactcaaatcctgcagtgccagacgtgtccccctgcttaatccagtacatgtccaggcccgtctgaagtttgctagagagcatttggatgatccagaagaagattgggagaatgtcatatggtcagatgaaaccaaaatataactttttggtaaaaactcaactcgtcgtgtttggaggacaaagaatgctgaggtgcatccaaataacaccatacctactgtgaagcatgggggtggaaacatcatgctttggggctgtttttctgcaaagggaccaggacgactgatccgtgtaaaggaaagaatgaatggggccatgtttcgtgagattttgagtgaaaacctccttccatcagcaagggcattgaagatgaaacgtggctgggtctttcttttcttttcatgacaatgatcccaaacacactgcccgggcaacaaaggagtggcttagtaagaagcatttcaaggtcctggagtggcctagccagtctccagatctcaaccccatagaaaatctttggagggagtggaaagtccgtgttgcccagcaacagccccaaaacatcactgctctagaggagatctgcatggaggaatgggccaaaataccagaaacagtgtgtgaaaatcttgtgaagacttacagaaaacgtttgacctctgtcattgccaacaaagggtgtataacaaagtattgagataaacttttgttattgatcaaatacttattttccaccatagtttgcaaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU552899 True 1290 lncRNA 0.45 1 23394964 23396253

Neighbor

gene id symbol gene type direction distance location
LOC110525161 bicdl1 coding upstream 2156 23359077 ~ 23392808 (+)
LOC118964855 LOC106585477 coding upstream 74843 23312041 ~ 23320121 (+)
LOC110525581 LOC106585477 coding upstream 86673 23305581 ~ 23313220 (+)
LOC110525520 LOC106585478 coding upstream 169178 23181353 ~ 23227167 (+)
LOC110525518 LOC106585474 coding upstream 197450 23079630 ~ 23197514 (+)
LOC110525542 NA coding downstream 164645 23560898 ~ 23570652 (+)
asgrl1 LOC106585488 coding downstream 199959 23596212 ~ 23606381 (+)
LOC110525547 LOC106585491 coding downstream 212420 23608673 ~ 23609827 (+)
LOC110525549 hnf1a coding downstream 281221 23677474 ~ 23703291 (+)
ggt5a LOC106585500 coding downstream 395191 23791444 ~ 23801151 (+)
G486479 NA non-coding upstream 398 23393897 ~ 23394566 (+)
G486481 NA non-coding upstream 1302 23392988 ~ 23393662 (+)
G486504 NA non-coding upstream 11198 23383552 ~ 23383766 (+)
G486499 NA non-coding upstream 30203 23364534 ~ 23364761 (+)
G486469 NA non-coding downstream 118 23396371 ~ 23396720 (+)
G486468 NA non-coding downstream 785 23397038 ~ 23399157 (+)
G486472 NA non-coding downstream 14823 23411076 ~ 23411770 (+)
G486518 LOC106585483 non-coding downstream 39047 23435300 ~ 23435975 (+)
G486525 NA non-coding downstream 50784 23447037 ~ 23447247 (+)
G486127 NA other upstream 720512 22674242 ~ 22674452 (+)
G485780 NA other upstream 950345 22441316 ~ 22444619 (+)
G484726 NA other upstream 1840867 21553732 ~ 21554097 (+)
G484674 NA other upstream 1928059 21464139 ~ 21466905 (+)
G487078 LOC106585486 other downstream 132487 23528740 ~ 23531799 (+)
G487146 LOC106585492 other downstream 256867 23653120 ~ 23667927 (+)
LOC110525563 LOC106585507 other downstream 515568 23911741 ~ 23914297 (+)
G488049 NA other downstream 1183708 24579961 ~ 24586313 (+)
G488078 NA other downstream 1234716 24630969 ~ 24631396 (+)

Expression


Co-expression Network