G486468


Basic Information

Item Value
gene id G486468
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23397038 ~ 23399157 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU552894
atttattattttaaaacGTTTATTGATTAAATTCATGAAGGGAACTGAATAGTACATCTCTTTCTCCAGTGTACAGCAAACCACAGCTGATAAGTGTGTTTCAACCATAGCACACAAGGCATGTCAATACATGCACAATTGTGTGTGCGAATGTGTGTATGTTCTGTATATTGAATATAAAACACACAACTATATTTATATACACATAATGAATAGAAATCATACAGTCTGGAATTTGATCCCATTTCTCCACTGCTTGGCTTGCATCACCCAGAGCTCAGGTTGTGGCACTGTCATGTTCCCCACCTCAATGGTTGTCTGGTTAGGGTCACATAGAGATTTCCCAAACCCACATCATGGCCACCTCAGCCTACACCAGTTACCCTCaagcagagggagaggtatgCAGGGCCCAGTGTGTGTAGGAAAGTGCTACGGTCAAGGTTCTCATTGCTCCATCACTAATGCTCCCCCATAGCAGACCCTCAGGAAGGAAACAGTCTCTCACTGCCAGCCTGCCACTCACTCACAGTCAAGCAGAACACTGGATATTAAGACTTCGGTTAAACAGATAACCAGATAGTCACAAGTCCTAGATAGAAGCATGACGAAACCACCAGGCATACACGTGTTAATAGTTCAGAACATTTTGCAAGCTCCTTGATAGCTTATGAATACTAAAATGCATGTCAGATACCTTATACATACCCCTTCAAACAGTGTTAAGtgctgaacacacacatacacacaaggcTAACCAGTCAGCTATGGATCAGGATCACTGCACCGACTACAATAAACCTCCCATTTCTTGTCAACACCATCCTCCTGGTACAAACCAAATGCACCCTGCACTGATAGATGTTATAATTAAAATGCACCACCAGTGGTGGAAGCTAAGGGGGTTGAATCCATAGCTGTGAGAGGTGCTGATATGAGGTGTTTGGAGCATGGGAGTAGAGGCCAGAGGCTGGAGTGTGGTTAGAGAGTGGTTCCTGGGCTCTCTCCCTGAGGGCTACCTGGGCccctacagaccctaaccccaAATTACTACACCCAGTGGGTCTCTATGGCAACAGTCCAATAAGGGGAGACACAGAGTTTCTAACTATTTCATTCACAACATATTGGCAGTATCATTGTTTTAAAAAAGTGGAAACTTAGCGCACAATAAGACTGCAGTGAGTGGTGATGGCAGAGCATTGCGTCCCAGCCAGGGTCATGGGAGTGGTTCACTGCTCTGAAAATCTCTCTAGAAACCGGTCGTTGGCTAGAGATTAAGGGGAAGAGGAGAAAAAGCTTGGCAAAAAAAGAGAACCAAAGATAAGATAGAAGTCACCAGTTCTGTCCATTGGATTAGTTGCTAAAGGTTGCCTATCAATCATCATCCTCATGATATTTTCCCATCAAGTCCAAAAACAAACCAGAAGTTCATAATGGGTTGGGATGAGCCATACAGGTGTCTGAAAAGTCCAAATAAAAAATGTACGAAGGTTGTGAACCCCTTCCCAAGTAAAGATGTTTTACTTAGTCCCCCATTCCAACAACAGACCCCACCCCTCACCCCCAAAAAACAAAGAAAATCACAAAAAAAAGTGAGTCCTCCACTTCGGGTGCACAGTTTCACTTGACTCAGTGACAAAATAGATACCGATGTAAGAATATATGCATATAGAAATCTGAGCATTATGGCCATCACTTGTCTGCTTGCAGATCCTTCAAGGAGGATCACTGTTAAATAGTGCTCATCTGCTGAATTCCAAATAAAACTTCTGACTTCTAATAAAATctgtacatgtattttttttcttcatgatTTTTGTCCAAAGGGGACTTTTTTCCCATTGTATATTTATTAAATCTATCTGGTCTTAATTTAGATGCTTGGAGTTCCATCCCGTgtgtgttctctggagcagacgCTGCTGGACTTTGTGAGTGGGTTCGAGTTCGCTAGCAGCACTTTTTCTTTCGTTTACTGTTCTTGGTGAGTTTGACCACGTCattctgttgctgctgctgctgcttggcCTGCACCTCCTTCTTGGCTCTCAGCACTAGCTCTGTGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU552894 True 2070 lncRNA 0.43 3 23397038 23399157

Neighbor

gene id symbol gene type direction distance location
LOC110525161 bicdl1 coding upstream 4230 23359077 ~ 23392808 (+)
LOC118964855 LOC106585477 coding upstream 76917 23312041 ~ 23320121 (+)
LOC110525581 LOC106585477 coding upstream 88747 23305581 ~ 23313220 (+)
LOC110525520 LOC106585478 coding upstream 171252 23181353 ~ 23227167 (+)
LOC110525518 LOC106585474 coding upstream 199524 23079630 ~ 23197514 (+)
LOC110525542 NA coding downstream 161741 23560898 ~ 23570652 (+)
asgrl1 LOC106585488 coding downstream 197055 23596212 ~ 23606381 (+)
LOC110525547 LOC106585491 coding downstream 209516 23608673 ~ 23609827 (+)
LOC110525549 hnf1a coding downstream 278317 23677474 ~ 23703291 (+)
ggt5a LOC106585500 coding downstream 392287 23791444 ~ 23801151 (+)
G486469 NA non-coding upstream 318 23396371 ~ 23396720 (+)
G486473 NA non-coding upstream 785 23394964 ~ 23396253 (+)
G486479 NA non-coding upstream 2472 23393897 ~ 23394566 (+)
G486481 NA non-coding upstream 3376 23392988 ~ 23393662 (+)
G486472 NA non-coding downstream 11919 23411076 ~ 23411770 (+)
G486518 LOC106585483 non-coding downstream 36143 23435300 ~ 23435975 (+)
G486525 NA non-coding downstream 47880 23447037 ~ 23447247 (+)
G486527 NA non-coding downstream 52237 23451394 ~ 23470618 (+)
G487069 kiaa1671 non-coding downstream 113678 23512835 ~ 23515113 (+)
G486127 NA other upstream 722586 22674242 ~ 22674452 (+)
G485780 NA other upstream 952419 22441316 ~ 22444619 (+)
G484726 NA other upstream 1842941 21553732 ~ 21554097 (+)
G484674 NA other upstream 1930133 21464139 ~ 21466905 (+)
G487078 LOC106585486 other downstream 129583 23528740 ~ 23531799 (+)
G487146 LOC106585492 other downstream 253963 23653120 ~ 23667927 (+)
LOC110525563 LOC106585507 other downstream 512664 23911741 ~ 23914297 (+)
G488049 NA other downstream 1180804 24579961 ~ 24586313 (+)
G488078 NA other downstream 1231812 24630969 ~ 24631396 (+)

Expression


Co-expression Network