G487078 (LOC106585486)


Basic Information

Item Value
gene id G487078
gene name LOC106585486
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23528740 ~ 23531799 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU553562
tcctctgtcctctggccTCTACCCTGTGCCTCTGGGGCTCTGAGTCCTGGGGGAACCAGGTCTGCTCCATGGGGGACCCAGGGCTGTGGGTCTCTCTCCTGGGGAAGGATGGTTCACTGGGCATACCAGACCAGCGTCTCTCTGGGACCAGGATGGGGGCCGTGGCCCTGTCCTCCAGCCCGTGGAGGAGCTGCTCCAGGCTGGGTTTATTGGCAGGCTTCCTGGGTGGCTCTGGTCCAGCCATGGGCCTATCCACTGATTCCTCGTCGATGCTTAGCCTCTGCTCCCACAGCTCCTGCTGAGAGGGGGCCCACACAGCACTGGGTCGCCCCACCCTTTCTGGAGAGTGGGGGTGGGATCTCGCCCCATTACCTGGGTCTGAGCCCTGGATGCCAGTAACAGGGAACACCTCTCTAGTGGGCAAGGGTTGTGTCTCGGTCTGGGACCTGAATGAGTCTATGTCCAGGATACCAGGTCTGTAGTGGTCATCTGCCCAGGGAGAGGGCTGCTTCCATCGGACACTAGGGGAGTGGGGACTGCCTCTGGAGTGCAGGTCACCCAAAGACCAGCACCCAGAGTCTAGATCCAACATTTTAGGTCTGAGAGGTAAAGAGTCCAGCACCCCCCTCTcctggttctctctcctctgcccttccATTATTCTCTGTCTATCTGCCTCCTCTTGTATGGTTACCTGTCTCATCTTCTCctgctcatctctctccatcttttcccTTAGTCTCTGCTTTCCAAGATCATGAagcagttgtctctctctctcattctgcttCTGTCTTTCAAACTCAAACAGttgtcttctctccatctcctttatTCTCTCCAGTTcttctaccttctgtctctctgtctctaactcccTTTTTCTATCCCTCTGGTTTTCCAATTCCTGTCTCTCAAAGtccaactgtttctgtctctgcctctccaaCTCACTCTGTTTTTGTCTTTCCAGATCgcgttgcctctctctctccaactctctctgtttttgtctttCCAAATCgcgttgcctctctctctccaactctctctgtttttgtctttCCAGATCgcgttgtctctttctcatcctcctttctctccctctccttttccctttgtcttcctttctctacctctgcCTCCCTACCCATCTCAGTGGTATTCCACTTCTGCAGAACTCCAACCCTCAGGTAGTGTGGTCCCTGTTCCTGTTGGGAGGCTGGTGCTCTCCTTTGAGCCAAACTGAGGACTCCTTGGacctgagcatgcctctcctccACTGGCTCAGCCCTGGCTGACCGATTCCCCTCAGAACGCCTGGAACGGAGGGTCATGGCTTTGTCCTCGAGCTGAGCCAAAGGGACACTCTCACTAAcggctctcctctctcccaccgcCTGCACAGTGTCAAACAAGTGCTCTACAAGaagtggactggagggagacacAGGCTTGCGGTAGGTGGCGGTGACCAGGCTGCCGTCGTTCTCCCCATCCCCAAGTTTGAGGGACACACTTCTCTTGGGACAGCCCTTTGTGGCACTCTGTGCCCTATCCTCCTCCATCACCAGCACGCTGTGTCTCTCCACCACATTCTCAAACAGGGCTGCTCGCACCGTCTGTGCCCCACTGCTGGGGCAGCTCTCCATCCATCGCCCTGCTTCAGTCAGTACTGCTGAAGGGTCAGAGGTGGTCTGGGTGGGCTGCTCTTGTATGCCTCTGATGTCGTCATCCACCTTTTTTTGGTCACTGAAGGTGTAAACGGAGTCCT

Function

NR:

description
protein PRRC2C-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU553562 True 1774 TUCP 0.55 2 23528740 23531799

Neighbor

gene id symbol gene type direction distance location
LOC110525161 bicdl1 coding upstream 135932 23359077 ~ 23392808 (+)
LOC110525522 LOC106585477 coding upstream 196325 22832330 ~ 23332415 (+)
LOC118964855 LOC106585477 coding upstream 208619 23312041 ~ 23320121 (+)
LOC110525581 LOC106585477 coding upstream 220449 23305581 ~ 23313220 (+)
LOC110525520 LOC106585478 coding upstream 302954 23181353 ~ 23227167 (+)
LOC110525542 NA coding downstream 29099 23560898 ~ 23570652 (+)
asgrl1 LOC106585488 coding downstream 64413 23596212 ~ 23606381 (+)
LOC110525547 LOC106585491 coding downstream 76874 23608673 ~ 23609827 (+)
LOC110525549 hnf1a coding downstream 145675 23677474 ~ 23703291 (+)
ggt5a LOC106585500 coding downstream 259645 23791444 ~ 23801151 (+)
G487069 kiaa1671 non-coding upstream 13627 23512835 ~ 23515113 (+)
G486527 NA non-coding upstream 58122 23451394 ~ 23470618 (+)
G486525 NA non-coding upstream 81493 23447037 ~ 23447247 (+)
G486518 LOC106585483 non-coding upstream 92765 23435300 ~ 23435975 (+)
G486472 NA non-coding upstream 116970 23411076 ~ 23411770 (+)
G487091 NA non-coding downstream 32334 23564133 ~ 23564830 (+)
G487104 NA non-coding downstream 42586 23574385 ~ 23574649 (+)
G487106 NA non-coding downstream 43652 23575451 ~ 23575710 (+)
G487109 NA non-coding downstream 47225 23579024 ~ 23579233 (+)
G487122 NA non-coding downstream 59212 23591011 ~ 23591264 (+)
LOC110525518 LOC106585474 other upstream 336823 23079630 ~ 23197514 (+)
G486127 NA other upstream 854288 22674242 ~ 22674452 (+)
G485780 NA other upstream 1084121 22441316 ~ 22444619 (+)
G484726 NA other upstream 1974643 21553732 ~ 21554097 (+)
G484674 NA other upstream 2061835 21464139 ~ 21466905 (+)
G487146 LOC106585492 other downstream 121321 23653120 ~ 23667927 (+)
LOC110525563 LOC106585507 other downstream 380022 23911741 ~ 23914297 (+)
G488049 NA other downstream 1048162 24579961 ~ 24586313 (+)
G488078 NA other downstream 1099170 24630969 ~ 24631396 (+)
G488258 NA other downstream 1406970 24938769 ~ 24939272 (+)

Expression


Co-expression Network