G487146 (LOC106585492)


Basic Information

Item Value
gene id G487146
gene name LOC106585492
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23653120 ~ 23667927 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU553637
CATCGTCAAATGATTGGACTCCTCTACTGATCAGTGATGGTCCAGGGAACGGGCAAAATGGCCATGATTGACTCAAGGGAGTATGAATGGGTGGAGGAGTAGCTTCTTACCAGGGAATTGATAGGTATATCCAGGGGTGATGCCAGTGTAACTTCGACTAGCATATGTAGCTGCCTGGAACCCTGGGTAACCCAGCATGCCGATACCCAGCATGAAAGCGTCCATGCCATAGGGCATCACCCGAGAGCGCCCCCTGGCCGAGCCCATGGGTGACATCACTTCCTTGGGCTGAGCCTTCTTACACTCCACCATTTTGTTATTTATCTCATGGAAGTGGATCTCACACACTTTATCTACCACGTCCTCATTCTCAAACGTGACAAAGCCAACTCTGTGTCTGTTGGTGGTCTTGTCAAACATGAGCATGGCATCGTCAACCTTTCCGAACTGGTCGAAATACGCCTTAACATCCTCGATGGTCGTGTTCACGGACAGACCTCCAACAAAAATCTTCTTGGTCCGAGTCACTAGCTTGGGCTGGGCTCTACGCGGGAACGCAACTTTCGGATCAATTGTTTTTGAATCCAACTCATGCCTGGTTACTGCCGAAACTGAATCCACACCGGCCTGGTCAACAAAAGTGACAAATCCAAAACCCCTCGAGCGCTTAGTAACTGGATCCCGCATCACCATGCACTCTTTCACCTCGCCATACTTGCAAAAGTACTCTTTCAATCCCTCTTGTGTCGTCTGCCAGCTGAGACCGCCTATGAACATTTTGCTAAAAAAAAAGAACACATGCAAGTGTAAATGTAAC
>TU553639
ACTTTGCTGATAGTTGCTTTCTGGAGAAAAGTTTAACTTACTCCGATTGTGATACGTGGTTGTCTAACGTagctagctaccttaagatgaatgcaataactataaaagtgtctgctaaatgaccaaaaaatTGTTGTTGAGGATACAGAGATTTAGTCTCACCTCTGTGTCTGTTGGTGGTCTTGTCAAACATGAGCATGGCATCGTCAACCTTTCCGAACTGGTCGAAATACGCCTTAACATCCTCGATGGTCGTGTTCACGGACAGACCTCCAACAAAAATCTTCTTGGTCCGAGTCACTAGCTTGGGCTGGGCTCTACGCGGGAACGCAACTTTCGGATCAATCTAGAGGAGGGAGTTAAGAGGAGAAAGGCCTGTTTACACACACAGCTCAatacagatcaactagcccatgcaATCAGGTGGATCTGTGTGAACCAAGTCCATGGTTATGGTCTCTTTGATGCTGCTCCTTGCCTCATCCTGTAAGGGTTCCTTAGCATGGGTGTTTGGGTTATAAAGCTACACCAGTACATAGGTCATTATGAGACCTAGAGGAATAAGACAAgtagaggatagatagaggggtaATTGTTTCCACAAGGTGGGGCATAGAAGGTGAAACAAATGTTGAGTATAAAATGTGCTTTCTCTTTGAAGAAATGTTCTCTTTTcagcattgttggaaaaggacccacgagtaaccatttccctgttagtctacacctgttgtttacgaagcatgtgacaaataaaatgttttgaaTTGAAAGAATCTGCGGGTAGATTTGGAACTAAGTAATTCTCATTTTAACTTCATTCTCGTCAATAACCAAATTGGCCTACACCGTGCACTGGCCAGAGCTGGTCTCAGATGTACTGAACACTGATCCAACCTCAGAAGTGCTGGTCTATTGGTGTGCTTGTGCAGGTAGAATGTGTGGGAATGTTGGAGTGACAGAGGCACAGAGGTGCCTCTCCTCTCTGGCCCGCCTGCCTTCCaaagccctctcctcctctcgtcaCCAACATGTGACATGTGATCTCCTGGAATCTCACACAGGCACTACAATCACAAACACATCTCACCTCCGCAAAaaaaggacagagaaagagacagacacagtgagcTAAAGAAAGGGAGAAACAGCACAGAACAAGAGGAAGACAAGGAGGGAGAATGGACGGATGCAAACAGAGGAGAGAGCCATCAACCTCACACACTGACAGCACATCAGCCtcattttgtttgtgtttgtttgtttttgcctcCCTCTCCCACTAAGACAATATGATGATCTTGTGCGCTATTTAAAAATCAACCGTGTTTTCATCCCACAGTTCTTCCACTGGGTTGACCTCTGCTCTAAAAGCATCAGTATACGTGAGAGCTAAGCTATCACTTACAGTGCAGAGACTGACATATTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU553637 False 817 TUCP 0.49 9 23653120 23667927
TU553639 True 1429 lncRNA 0.44 3 23655018 23662756

Neighbor

gene id symbol gene type direction distance location
LOC110525547 LOC106585491 coding upstream 45191 23608673 ~ 23609827 (+)
asgrl1 LOC106585488 coding upstream 48637 23596212 ~ 23606381 (+)
LOC110525542 NA coding upstream 84366 23560898 ~ 23570652 (+)
LOC110525161 bicdl1 coding upstream 262210 23359077 ~ 23392808 (+)
LOC118964855 LOC106585477 coding upstream 334897 23312041 ~ 23320121 (+)
LOC110525549 hnf1a coding downstream 14718 23677474 ~ 23703291 (+)
ggt5a LOC106585500 coding downstream 128688 23791444 ~ 23801151 (+)
LOC110525559 LOC106585501 coding downstream 178719 23841475 ~ 23847341 (+)
LOC110525560 LOC106585504 coding downstream 195098 23857854 ~ 23884968 (+)
LOC110525563 LOC106585507 coding downstream 248985 23911741 ~ 23914297 (+)
G487144 NA non-coding upstream 10907 23643902 ~ 23644111 (+)
G487125 NA non-coding upstream 61368 23593389 ~ 23593650 (+)
G487124 NA non-coding upstream 61885 23592866 ~ 23593133 (+)
G487122 NA non-coding upstream 63754 23591011 ~ 23591264 (+)
G487109 NA non-coding upstream 75785 23579024 ~ 23579233 (+)
G487153 NA non-coding downstream 6306 23669062 ~ 23669278 (+)
G487116 NA non-coding downstream 41583 23704339 ~ 23704700 (+)
G487114 NA non-coding downstream 42793 23705549 ~ 23707548 (+)
G487160 NA non-coding downstream 51269 23714025 ~ 23715430 (+)
G487161 NA non-coding downstream 58333 23721089 ~ 23723321 (+)
G487078 LOC106585486 other upstream 123219 23528740 ~ 23531799 (+)
LOC110525518 LOC106585474 other upstream 463101 23079630 ~ 23197514 (+)
G486127 NA other upstream 980566 22674242 ~ 22674452 (+)
G485780 NA other upstream 1210399 22441316 ~ 22444619 (+)
G484726 NA other upstream 2100921 21553732 ~ 21554097 (+)
G488049 NA other downstream 917205 24579961 ~ 24586313 (+)
G488078 NA other downstream 968213 24630969 ~ 24631396 (+)
G488258 NA other downstream 1276013 24938769 ~ 24939272 (+)
si:dkey-191c17.2 LOC106585342 other downstream 1976105 25638816 ~ 25641178 (+)

Expression


Co-expression Network