G487538 (hnf1a)


Basic Information

Item Value
gene id G487538
gene name hnf1a
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23697218 ~ 23699515 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU554106
TGGCATGTCaatagtaaagattgaaaaaagtaaagggcctagacaactgccctggggaattcctgattctacatggattatgttggagaggcttccatgaaagaaaaccctctgtgttctgttagacaggtaactttttatccacaatatagcagttGATGTAAAGCCATTGCACATATAtcttccagcagcagactatgattgataatgtcatAAGTTACCAATGAGGAGAGAGGACTCTCCCAGACTCATGGCGCTGGGCAAGGAGGCCATGACGAGTCCCTGGGGGGGAGAAGGCGAGGCAGACAGACTGTGGAGTGAGGTCAGGGTGCTTACTGGGGGCAGTGGACCACCTCCTGATACCTGAGATGGGAAAAAGGGTGGTTGGCAGATAGTGACAACCACAGCCATAGATTACTGTGAGGATTGAGATGCTTTGTAAACTCAAAGGTTTATGATGGAGGGAAGTATTGTACGATCTTACTAGTTTTATGCGATATGGCTTTGTAATTTCACTGGCTTACATGATGATCTATCACTTGTGATGATATGGATTGTGATCTCATTGGCTTATATTATGATGTAATAAATAtggtagcctcgtttcactgccaatttcgagtctcatagcaaattgtctgaatacttatgtaaataaggtatttctgtttttattcttAATACGTTTTGTAAAAAttcaaaaaactgtttttgctttgtcattatggggatattgtgtgtagattgaggatttgttggtattttagaataagactaacttaacaaaatgtggaaaaagggaaggggtctgaatactttccaaatgcactgtataatggTAGGTGATCTCACTAGTTTGTGATAGTGTGTTTCCAGGAGTGTGTGGCTGGGCTCAAGTTGGATGGGGCTGGCCAGGTGGCCTCCCAAGCCTCGGTCTCCACTGCGACCCCTTGCTGATCCCAGACTGTCACATGGGATTTGCTGGCTGTACTTCATGCCTGGAAGAggctgtgtgagagagtgtggtTGGTGGTGCTTGCTGATTGGCTGGTGTAAGGCGTATCGAGAGCCAGTTTATGGCGGAATGCCTCCTCCTTGCGGCGGTTAGCAAACCAGTTGTACACTCGTACCTCTGTCACTAGGTTAGAGCCCAGTCCAGCCAGCTGGGACGGAGACACACCCCTCTGGAGACACTCAACCCTGAGGGAGAGTCTGTTACACTCCTCCACCAATCCCTCTCGCTCCTCTTTACTTGGGTTCTTCTGTCGTTCATAGGCGTGGAATAGGATTTGCTGGGAGGCGGGTCCCCATTTGAACCTGTTCCTCCGTCCTTTCCTTAtgtcctctccctgctcctctccggTCCCAAGGCCATGACTGGCATTGGTAAACTCTGCATGGAAAACATGCATATTTTTGTATTGTTCATCTGCTATCGTCATATTAATACCAGTATTTACATTAGTATCAGTATTAttcagacaggattgtgttatatatatttttaaacatagGGATAATTCACAGGAACTTAATATGTTACATATTGGGTAATAACGGAATACATGTAACAGGGGTTACGTAATGGgcaattggggcggcaggtagcctagtggttagagcattgggccagtaaccaaaaggttgttagatcgaatccctgagctaacaaggtaaaagtCTGTGTTACATCCgtcgtcggaatgagaccaaagcgcagcgagGAAAATGTACAGCTTACTTTATTTTAGATGAACACCCAAAAACCACAACAAACATAAAATTCTGCAGGGCTATACAGCAGCtgtgcaaaaacaagatcccacaaactcaggtggaaaacaggctggctatgtatgattcccaatcagagacaacgatagattgcctctgattgggaaccatacctggccaacaaagaaatagaaaactagaatgcccacccaaat

Function

symbol description
hnf1a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and protein dimerization activity. Acts upstream of or within type B pancreatic cell development. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in glucose metabolism disease (multiple); liver disease (multiple); and renal cell carcinoma. Orthologous to human HNF1A (HNF1 homeobox A).

NR:

description
hepatocyte nuclear factor 1-alpha-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU554106 True 1949 lncRNA 0.44 3 23697218 23699515

Neighbor

gene id symbol gene type direction distance location
LOC110525548 LOC106585492 coding downstream 28850 23644995 ~ 23668368 (-)
LOC118965070 LOC106585337 coding downstream 53870 23622807 ~ 23643348 (-)
aakb1 aakb1 coding downstream 79532 23614867 ~ 23617686 (-)
pla2g1b LOC106585490 coding downstream 89392 23606349 ~ 23607826 (-)
LOC110525543 LOC106585487 coding downstream 106866 23588230 ~ 23590352 (-)
LOC110525551 LOC106585494 coding upstream 7042 23706557 ~ 23710228 (-)
LOC110525552 LOC106585495 coding upstream 14436 23713875 ~ 23717830 (-)
LOC110525553 LOC106585496 coding upstream 18865 23718380 ~ 23728979 (-)
LOC110525554 LOC106585497 coding upstream 30485 23730000 ~ 23750838 (-)
LOC110525555 LOC106585499 coding upstream 58289 23757804 ~ 23779720 (-)
G487529 NA non-coding downstream 23072 23673929 ~ 23674146 (-)
G487504 NA non-coding downstream 102235 23594705 ~ 23594983 (-)
G487503 NA non-coding downstream 103064 23593953 ~ 23594154 (-)
G487501 NA non-coding downstream 106161 23590664 ~ 23591057 (-)
LOC110525180 hps4 non-coding downstream 111664 23582127 ~ 23587892 (-)
G487546 NA non-coding upstream 4019 23703534 ~ 23704259 (-)
G487553 NA non-coding upstream 29793 23729308 ~ 23729536 (-)
G487620 NA non-coding upstream 140247 23839762 ~ 23839997 (-)
G487016 NA other downstream 305156 23390017 ~ 23392062 (-)
G487022 bicdl1 other downstream 311311 23385534 ~ 23385907 (-)
G486953 NA other downstream 443857 23251286 ~ 23258106 (-)
G486716 NA other downstream 856652 22837653 ~ 22840566 (-)
G488386 NA other upstream 654018 24353533 ~ 24353823 (-)
LOC110525585 LOC106585524 other upstream 961382 24655788 ~ 24715090 (-)
G489038 NA other upstream 1406690 25106205 ~ 25106570 (-)
G489511 hmcn2 other upstream 1797448 25496963 ~ 25497489 (-)

Expression


Co-expression Network