G487116


Basic Information

Item Value
gene id G487116
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23704339 ~ 23704700 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU553604
ctggaatgagcaggtgtgtccaaacttttgaatggtactgtacatcAGGGAGACTCACTGCCAATTACCAGTCTAGTCACTTGAAGAAGCTGCCTTACTATTAGAcagaacatttgatttgaacagtgTACTTAGTACACAGGGTGTCACACACAGCCTCACCTAAATCAATGCAAAAACTGCTGAGCCATTGATCCCCGTTTTACAATGAACACATACACTCACCgaacagtttattaggtacacccaaccagtgcttaatttgtaaatcgtCACCTGGGGGGGCTCTGCAACCTCGCTCTTAGGTATCGGAACGCATAAAAAATAATCCCCTTTATAATAAAGTATTGTAGGCATATCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU553604 True 362 lncRNA 0.42 1 23704339 23704700

Neighbor

gene id symbol gene type direction distance location
LOC110525549 hnf1a coding upstream 1048 23677474 ~ 23703291 (+)
LOC110525547 LOC106585491 coding upstream 94512 23608673 ~ 23609827 (+)
asgrl1 LOC106585488 coding upstream 97958 23596212 ~ 23606381 (+)
LOC110525542 NA coding upstream 133687 23560898 ~ 23570652 (+)
LOC110525161 bicdl1 coding upstream 311531 23359077 ~ 23392808 (+)
ggt5a LOC106585500 coding downstream 86744 23791444 ~ 23801151 (+)
LOC110525559 LOC106585501 coding downstream 136775 23841475 ~ 23847341 (+)
LOC110525560 LOC106585504 coding downstream 153154 23857854 ~ 23884968 (+)
LOC110525563 LOC106585507 coding downstream 207041 23911741 ~ 23914297 (+)
LOC110525298 LOC106585338 coding downstream 221146 23925846 ~ 23941878 (+)
G487153 NA non-coding upstream 35061 23669062 ~ 23669278 (+)
G487146 LOC106585492 non-coding upstream 41583 23653120 ~ 23667927 (+)
G487144 NA non-coding upstream 60228 23643902 ~ 23644111 (+)
G487125 NA non-coding upstream 110689 23593389 ~ 23593650 (+)
G487124 NA non-coding upstream 111206 23592866 ~ 23593133 (+)
G487114 NA non-coding downstream 849 23705549 ~ 23707548 (+)
G487160 NA non-coding downstream 9325 23714025 ~ 23715430 (+)
G487161 NA non-coding downstream 16389 23721089 ~ 23723321 (+)
G487168 NA non-coding downstream 26345 23731045 ~ 23731972 (+)
G487188 NA non-coding downstream 53119 23757819 ~ 23822749 (+)
G487078 LOC106585486 other upstream 172540 23528740 ~ 23531799 (+)
LOC110525518 LOC106585474 other upstream 512422 23079630 ~ 23197514 (+)
G486127 NA other upstream 1029887 22674242 ~ 22674452 (+)
G485780 NA other upstream 1259720 22441316 ~ 22444619 (+)
G488049 NA other downstream 875261 24579961 ~ 24586313 (+)
G488078 NA other downstream 926269 24630969 ~ 24631396 (+)
G488258 NA other downstream 1234069 24938769 ~ 24939272 (+)
si:dkey-191c17.2 LOC106585342 other downstream 1934161 25638816 ~ 25641178 (+)

Expression


Co-expression Network