G487160


Basic Information

Item Value
gene id G487160
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23714025 ~ 23715430 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU553657
AGTGATTATCATCACATACCTTCCACTGAGCATTGACCTGTAGTTATCATTTCATAGCTGAAAAATATTTTACCCACAAAATCTTTTCCAGCCTTCTTTTTACTGTTGATGAGTGTTGGAGGAGATGTGTAGCGGAGCACAGCTGATCGACAGCTGGACTTGACAGGgatttctctcacacacaaagcCTTGAGTTTAACAGTCTGAATACAAAGGCCCATGGAGAGGTTTAATTTAGTGTTGGGAGGCTCTGTATCACTCCAGCAGGCACAAACACACTGCAAGTAAATTTACAGCACTGTCACAAATGCTAACAACTTAAAAAGGCCAGGGGTGCCATCTGTGACTTACTACCAATGGCAGTTAATACAAAAATGTCTCATAGCCAACAGGGATTATTGGTTGTATATACAGCTAGAGGTGAAATGGGACACCCAATATGAATAATACAGCTTCTATCAAGGCAAGATTTCTAAGTCATGGAGCATTTGTTAGTCTCACAGCTGAATATTTAGCCCACTATCTGAGGAGGAAAGACACAGCAAAGGATAATGATTGTTACTAGAGCACAATGAGtagcaaaaatgtatttacttgTTCAATCAAATTAGGTGGTATCAAAaatttgaaaaattgAAACTAATATTATTACATTTGAATGAGTGTATTAGATCATTAGGCTGATTAGTTACACAAACCCACAAGATATGCCTAAATGTATTCCAACAAAAACAAGGATATTGAACTAACTAACTCAAGGCAGATTAAAATTATACGAATTAAAAGTAACCATTTAAATGTTCGAAAAGATTAAAAGAAAAACATGTTCAACATTACAAAAGAGTGATTGACAACAGTTTCCTATGAGTCCCAGCAACAGAGGGGTACGGGGTAACAAATAAATGATCAACTTGTTTTGAAGGCAGACATGGTCCTGTTTTCCCAAACCTGGGGCTGGTAAAGTTTGTTGGAATGTCTGAAGTGGAGGAAGTATACTCCTGTTCCCAAAAGGGCTATATTGTGGTTGTGTTCTGGGGCAATGTGACCGCTGCGTTGCATTGCACACAAGACGCTAATATTCAGGCACTACTCGCCCCCATCGTAGGCGTAGTCTGCCTTATTGTGCATGATCAGTTTGTTGTCCACAAAGTAGAAGCTGTCTGACCTGGTCTCATACGGGTGCTCCACCATTAGGC

Function

NR:

description
PREDICTED: protein unc-119 homolog B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU553657 True 1196 lncRNA 0.40 2 23714025 23715430

Neighbor

gene id symbol gene type direction distance location
LOC110525549 hnf1a coding upstream 10734 23677474 ~ 23703291 (+)
LOC110525547 LOC106585491 coding upstream 104198 23608673 ~ 23609827 (+)
asgrl1 LOC106585488 coding upstream 107644 23596212 ~ 23606381 (+)
LOC110525542 NA coding upstream 143373 23560898 ~ 23570652 (+)
LOC110525161 bicdl1 coding upstream 321217 23359077 ~ 23392808 (+)
ggt5a LOC106585500 coding downstream 76014 23791444 ~ 23801151 (+)
LOC110525559 LOC106585501 coding downstream 126045 23841475 ~ 23847341 (+)
LOC110525560 LOC106585504 coding downstream 142424 23857854 ~ 23884968 (+)
LOC110525563 LOC106585507 coding downstream 196311 23911741 ~ 23914297 (+)
LOC110525298 LOC106585338 coding downstream 210416 23925846 ~ 23941878 (+)
G487114 NA non-coding upstream 6477 23705549 ~ 23707548 (+)
G487116 NA non-coding upstream 9325 23704339 ~ 23704700 (+)
G487153 NA non-coding upstream 44747 23669062 ~ 23669278 (+)
G487146 LOC106585492 non-coding upstream 51269 23653120 ~ 23667927 (+)
G487144 NA non-coding upstream 69914 23643902 ~ 23644111 (+)
G487161 NA non-coding downstream 5659 23721089 ~ 23723321 (+)
G487168 NA non-coding downstream 15615 23731045 ~ 23731972 (+)
G487188 NA non-coding downstream 42389 23757819 ~ 23822749 (+)
G487220 LOC106585502 non-coding downstream 99399 23814829 ~ 23817325 (+)
G487228 NA non-coding downstream 121126 23836556 ~ 23837029 (+)
G487078 LOC106585486 other upstream 182226 23528740 ~ 23531799 (+)
LOC110525518 LOC106585474 other upstream 522108 23079630 ~ 23197514 (+)
G486127 NA other upstream 1039573 22674242 ~ 22674452 (+)
G485780 NA other upstream 1269406 22441316 ~ 22444619 (+)
G488049 NA other downstream 864531 24579961 ~ 24586313 (+)
G488078 NA other downstream 915539 24630969 ~ 24631396 (+)
G488258 NA other downstream 1223339 24938769 ~ 24939272 (+)
si:dkey-191c17.2 LOC106585342 other downstream 1923431 25638816 ~ 25641178 (+)

Expression


Co-expression Network