G487161


Basic Information

Item Value
gene id G487161
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23721089 ~ 23723321 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU553658
AATAACATTTACATCTATTTTTCATGTACATAAATAAAAAAAGCCTACATGCCAAATTCTAGGTGATATGCATATTGGCTGCAGCTTCATGTCCAAACCGATGCTGACATGAGGCTCTGTAAAATGTAGCCAAACTTTAATGAGACTGTTAATTACATAAATATAGGCAAACACCAGTCATTTTTTACAAATATAATGAAGGAAAATTAACATTAACGTTTAAAGGCTTGAGGCATGGTTTGTTCAGATCAAATGGTCACAAGACCGGAGACAGTGCCTGTTGCGCACCACACATCACCCACCTTGAATCTGAGCAGAGGTGGTCAGCATTTTAACTATAAACTTGTTTAAAACCTGGatgttttatgttattttatgaaGCATGGCTTACCTTGTTTaaaagtagcctagccaaaataCAACCATAGAAATGTTGAAGTAATTATTTTAAACACCTAACATGCCaaatgttctattggttttcacaTTTATATTTTATTGTCGAGCAGCCAAAggcataatcctagtcatataagtaacccatgctagttgatgcatctttagatctcccctctttcttaATTTCTAACAGATATTTTTTtatctctgtcacatgaaaccaCTCACATGTGCGGTGCACTTTTGGCAACAGTTTTCCCGCTAATAGCATTTCGGAACCTTCCCAGATAGCACAGCCATGTGCACATTGTTGAGCATATAATATGAAGAAATAATActtaatcaacattttaagctaaacggtCTGATCTGTTGTATCAGCCTCAttgttttttttgtctgtttTGAACCGTAGACATTTATTGTCCCAGGGACAACAGGACACCCTTAATTTCAAGCACTGGAAGACAAGTGGCTGAAAATGTTAAATGTCAAGCCCTGCAATTTCTGATAACTCTATAGTCTAGCTGTCAGTTATGCATGCCAGCACAACAAGTAGACTTCTTACCTGTGACCACATTTGAGGAAACTTGCATTGTTATATGAAACAGCACAGCATGGTATAGTCCCATGGAGGTACACATGCATTTTTAAACACGTTATGCAACATAATTGTGAAATCCACCTTAGATGTGAAAACACAATCAGCCTTCTTTTCAAACAGCACATGAAACATCAATTCTCCGCCATAGAATAGACTGAGGCTGTAACAGTACAGACTTGTTGAAATTATTAGCATGTTGTTTCTCAACAAATTATGGCACAACTTTGTATCAAAAGCTCAAATAAATTGTAGCTTTACAACACTAGCAAGTTTGGTGATAATCAAGCccaaaaataaagtaaaaaaagaGCAAGCAAAAACATTCAAATGCCTAATTGGCCAAATTGGCAACCGTCTCCCACTGTCCCCTCCAATCTCCACCAAACATACATTCTCTAAAACATCTTCCAATTTCCAAATTTGTAAGAATCAATAGATTTTCTGGATATTATCTCCTGTATCATCTGTGACTAAATACTGGGCCTGACTTTTGTTGATCACCATAGCAGCCTATCTGCATTCACTTCAAGCCACACCTCATCCAAAGCCATACTCATCTATAAAGAGGGACAGCCAATCACATTTCAGCACCCCTCTGTATAGTCCCAGCCTCTTcctacaagacaagacaaacctGGTTTGAAAGTGGTCAATCCTGTCTCATGCGAGATCATGTCTTTGTGATGTGATAATTTGAAACATGGTGGAAATGTGTAAGATGTACAATACACACAaactcactctctccatcccctttTCTCTGTGTGaccttaaagttagtgaggaagGCATTTTATTCTGTCACCTGCACTGCATTCCAAATTTGTTGTCTCTTTTTTGTCCACTTAATGCCATTGGCTCTCGTGCTTACTCCTGTCTATTTGCCTAGACTTTCCTTGTGTCTCTTCCTTgtccgcccccccccccttcagtcTCTTGTCCATCATGTTCCGTTTCCCCCTCTATTTTACATTCTCACAGCCGACAGAGGCAGAAGAGTGTAGGGATGAACACCCCGAATGCCACCAGGATAGGGAACATGAGGCTGCTATTGTCGGCCGCATACGGGTTTGGTGTTCTGGGGCCTGACTGGACCCTGTACTTGGGAGCTGTCGAGGTACTCTTCTTAccaccctcctctcctgcctcagactcctcttcttcctcctcctcaagTTCTTCATGTTTCTCCAGTCCAGGGTGAG

Function

NR:

description
malectin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU553658 True 2208 lncRNA 0.40 2 23721089 23723321

Neighbor

gene id symbol gene type direction distance location
LOC110525549 hnf1a coding upstream 17798 23677474 ~ 23703291 (+)
LOC110525547 LOC106585491 coding upstream 111262 23608673 ~ 23609827 (+)
asgrl1 LOC106585488 coding upstream 114708 23596212 ~ 23606381 (+)
LOC110525542 NA coding upstream 150437 23560898 ~ 23570652 (+)
LOC110525161 bicdl1 coding upstream 328281 23359077 ~ 23392808 (+)
ggt5a LOC106585500 coding downstream 68123 23791444 ~ 23801151 (+)
LOC110525559 LOC106585501 coding downstream 118154 23841475 ~ 23847341 (+)
LOC110525560 LOC106585504 coding downstream 134533 23857854 ~ 23884968 (+)
LOC110525563 LOC106585507 coding downstream 188420 23911741 ~ 23914297 (+)
LOC110525298 LOC106585338 coding downstream 202525 23925846 ~ 23941878 (+)
G487160 NA non-coding upstream 5659 23714025 ~ 23715430 (+)
G487114 NA non-coding upstream 13541 23705549 ~ 23707548 (+)
G487116 NA non-coding upstream 16389 23704339 ~ 23704700 (+)
G487153 NA non-coding upstream 51811 23669062 ~ 23669278 (+)
G487146 LOC106585492 non-coding upstream 58333 23653120 ~ 23667927 (+)
G487168 NA non-coding downstream 7724 23731045 ~ 23731972 (+)
G487188 NA non-coding downstream 34498 23757819 ~ 23822749 (+)
G487220 LOC106585502 non-coding downstream 91508 23814829 ~ 23817325 (+)
G487228 NA non-coding downstream 113235 23836556 ~ 23837029 (+)
G487236 NA non-coding downstream 124720 23848041 ~ 23848259 (+)
G487078 LOC106585486 other upstream 189290 23528740 ~ 23531799 (+)
LOC110525518 LOC106585474 other upstream 529172 23079630 ~ 23197514 (+)
G486127 NA other upstream 1046637 22674242 ~ 22674452 (+)
G485780 NA other upstream 1276470 22441316 ~ 22444619 (+)
G488049 NA other downstream 856640 24579961 ~ 24586313 (+)
G488078 NA other downstream 907648 24630969 ~ 24631396 (+)
G488258 NA other downstream 1215448 24938769 ~ 24939272 (+)
si:dkey-191c17.2 LOC106585342 other downstream 1915540 25638816 ~ 25641178 (+)

Expression


Co-expression Network