G487168


Basic Information

Item Value
gene id G487168
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23731045 ~ 23731972 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU553667
TTCACAAGTAGACATTTATTTTTAGTAGATTGCGTGGCCTACTTTATACATTAGACAATGTATTACATTTACTGTCACACCCATACAGATAATACTATATTTAAAATTAGGTTTGTCTCTGGCATGCATAAAAACAGCACAATGACAAACTAGGACTCTGCAATTTATTTGTCaaactgtacagacagacagacagacagacagacagacagacagacagacagacagacagacagacaggatactGTACACATAAACCATCATGTTTATGCACTGCACACAAATGTGAAGAAAAGCTACTATTTTCCAGATCTGGGAAAAGCGTGTTTGCTGAGGTCCTCTTAGCTCTTGCTTGTCCCATAAACCCAGTGCATTAGAGAGGATCTGGTGCATTTATGGTGctgggtaaacacagtgatcacCTCACAAAAGATCacagtgacaaacacacacacaaataagacTCTCTGCTTTTCTCACTCTATTACCCAAACTTGAAGAACATATCAGTAGTCACAAGAAATATTGCCATTTAAAGGTTGAGAAACAAAACTTGCCTAAACAGCAGGCTACACACAAGTGTATACAGTTCGTGGAGGGTTAATAGTGTGGAAACCATTAGCGGGTCAGTCTGTAAGCTACAGTAGAACCTGTCTAAGTTGGAATGTGGGGCTTTTAGGGAAGAACACTATTTTGAGCAGTACCGTGGTCTTCCGTTTCTACTTAGAGGTAagggctttaattccagtttttcTCAGGAAAAGATAGCTCAGAGGTCCAAGTATTTATTCCGTTTTGCTCATTCAATGATGATGACAAAGGGGCCGAGGTTCACATTCAGAATAATTAACTTGAAGCCATATCGACCATTCCTCCTCTCAGCGGGACATCATTCGTACA
>TU553669
TTCACAAGTAGACATTTATTTTTAGTAGATTGCGTGGCCTACTTTATACATTAGACAATGTATTACATTTACTGTCACACCCATACAGATAATACTATATTTAAAATTAGGTTTGTCTCTGGCATGCATAAAAACAGCACAATGACAAACTAGGACTCTGCAATTTATTTGTCaaactgtacagacagacagacagacagacagacagacagacagacagacagacagacaggatactGTACACATAAACCATCATGTTTATGCACTGCACACAAATGTGAAGAAAAGCTACTATTTTCCAGATCTGGGAAAAGCGTGTTTGCTGAGGTCCTCTTAGCTCTTGCTTGTCCCATAAACCCAGTGCATTAGAGAGGATCTGGTGCATTTATGGTGctgggtaaacacagtgatcacCTCACAAAAGATCacagtgacaaacacacacacaaataagacTCTCTGCTTTTCTCACTCTATTACCCAAACTTGAAGAACATATCAGTAGTCACAAGAAATATTGCCATTTAAAGGTTGAGAAACAAAACTTGCCTAAACAGCAGGCTACACACAAGTGTATACAGTTCGTGGAGGGTTAATAGTGTGGAAACCATTAGCGGGTCAGTCTGTAAGCTACAGTAGAACCTGTCTAAGTTGGAATGTGGGGCTTTTAGGGAAGAACACTATTTTGAGCAGTACCGTGGTCTTCCGTTTCTACTTAGAGGTAagggctttaattccagtttttcTCAGGAAAAGATAGCTCAGAGGTCCAAGTATTTATTCCGTTTTGCTCATTCAATGATGATGACAAAGGGGCCGAGGTTCACATTCAGAATAATTAACTTGAAGCCATATCGACCATTCCTCCTCTCAGCGGGACATCATTCGTACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU553667 False 900 lncRNA 0.40 2 23731045 23731972
TU553669 True 892 lncRNA 0.40 2 23731045 23731972

Neighbor

gene id symbol gene type direction distance location
LOC110525549 hnf1a coding upstream 27754 23677474 ~ 23703291 (+)
LOC110525547 LOC106585491 coding upstream 121218 23608673 ~ 23609827 (+)
asgrl1 LOC106585488 coding upstream 124664 23596212 ~ 23606381 (+)
LOC110525542 NA coding upstream 160393 23560898 ~ 23570652 (+)
LOC110525161 bicdl1 coding upstream 338237 23359077 ~ 23392808 (+)
ggt5a LOC106585500 coding downstream 59472 23791444 ~ 23801151 (+)
LOC110525559 LOC106585501 coding downstream 109503 23841475 ~ 23847341 (+)
LOC110525560 LOC106585504 coding downstream 125882 23857854 ~ 23884968 (+)
LOC110525563 LOC106585507 coding downstream 179769 23911741 ~ 23914297 (+)
LOC110525298 LOC106585338 coding downstream 193874 23925846 ~ 23941878 (+)
G487161 NA non-coding upstream 7724 23721089 ~ 23723321 (+)
G487160 NA non-coding upstream 15615 23714025 ~ 23715430 (+)
G487114 NA non-coding upstream 23497 23705549 ~ 23707548 (+)
G487116 NA non-coding upstream 26345 23704339 ~ 23704700 (+)
G487153 NA non-coding upstream 61767 23669062 ~ 23669278 (+)
G487188 NA non-coding downstream 25847 23757819 ~ 23822749 (+)
G487220 LOC106585502 non-coding downstream 82857 23814829 ~ 23817325 (+)
G487228 NA non-coding downstream 104584 23836556 ~ 23837029 (+)
G487236 NA non-coding downstream 116069 23848041 ~ 23848259 (+)
G487248 NA non-coding downstream 144156 23876128 ~ 23876451 (+)
G487146 LOC106585492 other upstream 63118 23653120 ~ 23667927 (+)
G487078 LOC106585486 other upstream 199246 23528740 ~ 23531799 (+)
LOC110525518 LOC106585474 other upstream 539128 23079630 ~ 23197514 (+)
G486127 NA other upstream 1056593 22674242 ~ 22674452 (+)
G485780 NA other upstream 1286426 22441316 ~ 22444619 (+)
G488049 NA other downstream 847989 24579961 ~ 24586313 (+)
G488078 NA other downstream 898997 24630969 ~ 24631396 (+)
G488258 NA other downstream 1206797 24938769 ~ 24939272 (+)
si:dkey-191c17.2 LOC106585342 other downstream 1906889 25638816 ~ 25641178 (+)

Expression


Co-expression Network