G487220 (LOC106585502)


Basic Information

Item Value
gene id G487220
gene name LOC106585502
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23814829 ~ 23817325 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU553726
AGTCAGTTTTTATTGGCAGTAAAATGTCATTCTAAGTATGGCACCACATACAGATACAATGACCCAGAGTTGACAAATAGTATAACAATGACACACAATGCTAACGTATACAGTGTGAGCAAAATATTTTCCTACCATAGTCCCATAAAACCATTACAACACCTTTGATATTTTTTAAACATACACATATTGTACATGAAAAGTGATGTCCTGTGCTACATTTCAGTGTACATTTAATGTCAGTGAAATGGGGAACATTTGTTGCTAGCGGTATGTCATTAGTTTATTAATACCTTGCCCTTGTGTGTCCTCTAATTGTTCCGGCAGAGGTTAGAGTGCTCATTTTCACAATGAAATAACTACAATAAATAATACAAACAGTTACAACAGTAATCAGACATTATACAACAGCAAACACACATTAAACACCCTCACACATATTCAATCAGACGATACCAGTATATTACATCCAGTTATTCAATTATTGTTAATAGCAGTTTGCTGAATGACCTTTATGTATATTATGGTGTCAGTGTGGTTAAGCTTCTGAAATATCATTGTGAAAAATCAATATTGATATTAGGATGAATTGGTAAAAACAGCTTCATGCATCAATGAGAGAATGAAATGGATCTGAAGTCAAATCCATTTCTCACATTTCTTAAAGTGCAATACAGCATGGAGCTCAGCTCCAGTTGGTAAACCCAACTGACCTattatgtgctatttcatagacCACCACTATCCAGCACTACACTCAGCCCACCCCGCTGATTATCAGTCCTGGTAATAGCCTACAACTGATATGTAACAGTCATGTTTCTCCcacaataaacaaacacacatataaacaAACGCAcatataaacaaacacacatataaaTGTTAATAACGACATATTAGTACAAAGGGTGTCAGTATGTGATTCCATTTGGTACGTTCCTCACTACAAAGAGATGAATGAGTCCACCCTTGGGGCTTGTCTGCACTGTCATTCATCCCACATGTGTTCTAAAATGATAATGACTAAAACAGCTAAATACAGTGGTGAATCTCAGAGTTTTGGCAACAGCGAACAATCAGTCTATTGTTGAGTCCTACCTGTTGTCTTCTAAGATGGCTTTATTCACCAGCAGTGCACTAAAATAGCCTGTGGAAACACAACAGAGCCCTGTTATGTGTCATCATTTACATCTACGTAGGTATTCACAAGTGGACATTtcgaaaggggggcggggggggggagcAAAAAGTCTTGACTTAGCAGTTTTGCCAGAATCACGTGACGGTTCGTCGGCTGTATAGTCTGTTGAACTTGTTTCATAGCCTTTGTTGAGAGATTAACAGAGAACACACAATGTGGAGCTAGGCCCTGCCTGCCAGGGATAGTCTCAGTGACAGTCCTGGTAGAGAACCTGGTTGGGACCTACTGCTTCCAAACCAACAGCAGCTCATTAGACCACCAGCGTTATGCCGCTCCTCCGTCAAGCCGTCTGATCTGAAGTCCTTGGGATTTGCTCCACAGCTGCTACTttaagagggcgagagagagagagcacctttTCCTAAATTCTTCTAGCCCACCTCCAATGAAACCGCACCTCGTTCCCAGGAGCACCATCCACCAACACAGTAAGTCACCAACATAATCAGTTACTGCAGTGGTCTTGTGTTGGTTAACTCATAGATGGCGAGAGATTATTTGGTGGCTGTGTTGGAACGATGGTCTCTGGAATGTGTGGCGCTAAACATCCCTCGTGCCACAATGGGTGACTGGGCTCATGGTGTAAAGGGCAACATGGGAAAGGTAGGAACTTGAAGCTGTGGGAAGGCCTTTCAAACACAGCTGAACCGAGCCAGGGGGACTTCAACTCATCACCTCTCACAGTAGTGTAGTGTGAAGTCCTTTGAAATCTTTTTCCCCCCTATAGCCCATGGCTCCAGCTCGTCTtcatcttcctccccctcctcttcccctgcctcctcctcctcctcgtagtGGCTGGGTTCCTCAATGGAGGTCTCCATGTGGTAGCAGTAGGGTTGGCCCTCTGTGTACTCATAGATGGTGGGCAAGCTGCTCTTCAGGCTGCAGCGGCGTCGCAGGGCCACTAACAGGGGCTGGGGCATGGTGAAAATGTCAAAGTTGTTGCCCAGATCAATCCAAGCCAGGTTGGAGAACTTCTTTGGGTCTTTCAGGATCTCAGTCAAGTCTTTGACTATGGCCAGGGTCAGCCGGTTGCCGTTGAGGGCCAGGGTGTTGAGTTTGGGCAGAGACCCCAGGACCGGTAGCAGGACACGGAGGTTCTCATCTTGGAGCTCAGTGAAGCTGATATCCACAGCCACCACTGCATCCCCACTGTTCTGAAGGTAGAAGGCCACGTGGCGAACATCTCGACTGGAGAGAGGTATGCCAGACAAGTCAACTGTGTCAGTGGATACTTTTCTCTGCAGGGTTGTCTTGA

Function

NR:

description
leucine-rich repeat-containing protein 75B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU553726 True 2465 lncRNA 0.45 2 23814829 23817325

Neighbor

gene id symbol gene type direction distance location
ggt5a LOC106585500 coding upstream 13678 23791444 ~ 23801151 (+)
LOC110525549 hnf1a coding upstream 111538 23677474 ~ 23703291 (+)
LOC110525547 LOC106585491 coding upstream 205002 23608673 ~ 23609827 (+)
asgrl1 LOC106585488 coding upstream 208448 23596212 ~ 23606381 (+)
LOC110525542 NA coding upstream 244177 23560898 ~ 23570652 (+)
LOC110525559 LOC106585501 coding downstream 24150 23841475 ~ 23847341 (+)
LOC110525560 LOC106585504 coding downstream 40529 23857854 ~ 23884968 (+)
LOC110525563 LOC106585507 coding downstream 94416 23911741 ~ 23914297 (+)
LOC110525298 LOC106585338 coding downstream 108521 23925846 ~ 23941878 (+)
LOC110525570 LOC106585512 coding downstream 224704 24042029 ~ 24042359 (+)
G487168 NA non-coding upstream 82857 23731045 ~ 23731972 (+)
G487161 NA non-coding upstream 91508 23721089 ~ 23723321 (+)
G487160 NA non-coding upstream 99399 23714025 ~ 23715430 (+)
G487114 NA non-coding upstream 107281 23705549 ~ 23707548 (+)
G487116 NA non-coding upstream 110129 23704339 ~ 23704700 (+)
G487228 NA non-coding downstream 19231 23836556 ~ 23837029 (+)
G487236 NA non-coding downstream 30716 23848041 ~ 23848259 (+)
G487248 NA non-coding downstream 58803 23876128 ~ 23876451 (+)
G487249 NA non-coding downstream 59493 23876818 ~ 23877024 (+)
G487255 LOC106585505 non-coding downstream 72262 23889587 ~ 23891179 (+)
G487146 LOC106585492 other upstream 146902 23653120 ~ 23667927 (+)
G487078 LOC106585486 other upstream 283030 23528740 ~ 23531799 (+)
LOC110525518 LOC106585474 other upstream 622912 23079630 ~ 23197514 (+)
G486127 NA other upstream 1140377 22674242 ~ 22674452 (+)
G485780 NA other upstream 1370210 22441316 ~ 22444619 (+)
G488049 NA other downstream 762636 24579961 ~ 24586313 (+)
G488078 NA other downstream 813644 24630969 ~ 24631396 (+)
G488258 NA other downstream 1121444 24938769 ~ 24939272 (+)
si:dkey-191c17.2 LOC106585342 other downstream 1821536 25638816 ~ 25641178 (+)

Expression


Co-expression Network