G487228


Basic Information

Item Value
gene id G487228
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23836556 ~ 23837029 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU553736
CCATCCTACCGAtgctcgacttcggcgatgtcatttacaaatagcctccaacactctactcaacaaagtggatgcagtctatcacagtgccatccgttttgtcaccaaagccccatatactacccaccattgcgacctgtacgctctcgttggctggtcctcgcttcatactcgtcgccaaacccactggctccaggtcatatacaagtctctgctaggtaaagccccgccttatctcagctcactggtcaccatagcagcacgcgctccagcagcaCGCGCTCTCACTAGTcactcccaaagccaattcctcctttggatgcctttccttccagttctctgctgccaatgactggaacgaactgcaaaaatcactgaagctggagactcatatctccctcactagctttaagcaccagctgtcagagcagcttacagatcaatACACCTGcaccagctcacagatcactgcac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU553736 True 474 lncRNA 0.51 1 23836556 23837029

Neighbor

gene id symbol gene type direction distance location
ggt5a LOC106585500 coding upstream 35405 23791444 ~ 23801151 (+)
LOC110525549 hnf1a coding upstream 133265 23677474 ~ 23703291 (+)
LOC110525547 LOC106585491 coding upstream 226729 23608673 ~ 23609827 (+)
asgrl1 LOC106585488 coding upstream 230175 23596212 ~ 23606381 (+)
LOC110525542 NA coding upstream 265904 23560898 ~ 23570652 (+)
LOC110525559 LOC106585501 coding downstream 4446 23841475 ~ 23847341 (+)
LOC110525560 LOC106585504 coding downstream 20825 23857854 ~ 23884968 (+)
LOC110525563 LOC106585507 coding downstream 74712 23911741 ~ 23914297 (+)
LOC110525298 LOC106585338 coding downstream 88817 23925846 ~ 23941878 (+)
LOC110525570 LOC106585512 coding downstream 205000 24042029 ~ 24042359 (+)
G487188 NA non-coding upstream 13807 23757819 ~ 23822749 (+)
G487220 LOC106585502 non-coding upstream 19231 23814829 ~ 23817325 (+)
G487168 NA non-coding upstream 104584 23731045 ~ 23731972 (+)
G487161 NA non-coding upstream 113235 23721089 ~ 23723321 (+)
G487160 NA non-coding upstream 121126 23714025 ~ 23715430 (+)
G487236 NA non-coding downstream 11012 23848041 ~ 23848259 (+)
G487248 NA non-coding downstream 39099 23876128 ~ 23876451 (+)
G487249 NA non-coding downstream 39789 23876818 ~ 23877024 (+)
G487255 LOC106585505 non-coding downstream 52558 23889587 ~ 23891179 (+)
G487257 LOC106585505 non-coding downstream 56172 23893201 ~ 23894262 (+)
G487146 LOC106585492 other upstream 168629 23653120 ~ 23667927 (+)
G487078 LOC106585486 other upstream 304757 23528740 ~ 23531799 (+)
LOC110525518 LOC106585474 other upstream 644639 23079630 ~ 23197514 (+)
G486127 NA other upstream 1162104 22674242 ~ 22674452 (+)
G485780 NA other upstream 1391937 22441316 ~ 22444619 (+)
G488049 NA other downstream 742932 24579961 ~ 24586313 (+)
G488078 NA other downstream 793940 24630969 ~ 24631396 (+)
G488258 NA other downstream 1101740 24938769 ~ 24939272 (+)
si:dkey-191c17.2 LOC106585342 other downstream 1801832 25638816 ~ 25641178 (+)

Expression


Co-expression Network