G487650


Basic Information

Item Value
gene id G487650
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23914366 ~ 23915707 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU554255
ttaaagtaatatGTGCACTTGGATCACATTCAAAGGTTGACGATAAAGATCTGAAGTTTTGCCTCCATTTAAATGAATTTAGAAGTAGCTACTTGTGACTTCACATACATGCAAAACAATCAGTGCTTTACAGTATTGTTAAAAGGAAGTACATTATGTTGAGGACAATATTTCAGCCTAATATTTTCACAACCACACTATAAGAGTTCACCTACCATGTAACAACAGTATGAGGAGTGTGCTTAAAATGCATTAACTTATCAAAAAACCACCAGAGCATATCTTTAATTATCAATAATGTTGAGTTTAAAAAGTTTAAATATAAATATTCCAACCCTGATGGACAGATTAAGGTCACCTGACTAAAAAATATCTGAAATTCTGCACTTCGCTTGCACCATAACTATTATAGCAGTTATTACATGTTATACTCTCCTGGGGAGTTTCACTTTCATGGAAATTGGCCGGTTATCATTTGTAAATTAATAATTCTAGCTACTTCACAAAATGTTCATCCCACACTTTTAGTGTTCCCCAGCCGCCATAGACAAAACTTTGTGATATAAATACAAATATCATCTATTTAATGAAGATATCCAAAAATATTCAACTACAAATGTCACACTCACATTCAGATCTGTTTCTGAACACATAAGGACGACAATAGACATGCAGcaaagtaataaaataaaaaaagttgctTGAGTCCAATCGAATGAACAATACAAAGCAAATTGTCCTGACCTTTCCACAACCATTTTAGCAAATAGAAAAGGCCTAGAGCAGTCCAAATCCCAATACAAAACATCT
>TU554254
AACAGTAATTCACATAGTACATCTCATTGATGTAATGAAAACTTTTAAAAAACATGATTAAATGAAGCAACATAAATCTGGATTAGCTTGTAGAATTCATTCTTCCATAAGCCTAGGGTTGTTATGCATAATAACAATTGCACTTTGACTCCAGTCCATCTAATGACAATGAATGTAATCAGATATGACATACAAAATATGTATAATGTATTTCAGAAATGTTAATGATTGCCTAATAAAGAGGTTTTCTCAATCCAATTCACTTACCTTTGGGGAGACTCAGCACATTGTAACAGATTTACAGTATACGACTATAAAACTATTCAACCCCTTGGATTTGGCAACAGACACAAGGCAGTATAGTCAGAGTAAACATAATTAAGTGGGGCTTAATAAGCCCTCAAACAGAACATCTTAAAAACATCAAATGGCATTTAAAGGGGATGTTTTAAAAAAGGCGTCAACCATCATCCAATATACTGACgcataaaataatttaaaaaaaaacacaaataatcATGCcattattttattaaagtaatatGTGCACTTGGATCACATTCAAAGGTTGACGATAAAGATCTGAAGTTTTGCCTCCATTTAAATGAATTTAGAAGTAGCTACTTGTGACTTCACATACATGCAAAACAATCAGTGCTTTACAGTATTGTTAAAAGGAAGTACATTATGTTGAGGACAATATTTCAGCCTAATATTTTCACAACCACACTATAAGAGTTCACCTACCATGTAACAACAGTATGAGGAGTGTGCTTAAAATGCATTAACTTATCAAAAAACCACCAGAGCATATCTTTAATTATCAATAATGTTGAGTTTAAAAAGTTTAAATATAAATATTCCAACCCTGATGGACAGATTAAGGTCACCTGACTAAAAAATATCTGAAATTCTGCACTTCGCTTGCACCATAACTATTATAGCAGTTATTACATGTTATACTCTCCTGGGGAGTTTCACTTTCATGGAAATTGGCCGGTTATCATTTGTAAATTAATAATTCTAGCTACTTCACAAAATGTTCATCCCACACTTTTAGTGTTCCCCAGCCGCCATAGACAAAACTTTGTGATATAAATACAAATATCATCTATTTAATGAAGATATCCAAAAATATTCAACTACAAATGTCACACTCACATTCAGATCTGTTTCTGAACACATAAGGACGACAATAGACATGCAGcaaagtaataaaataaaaaaagttgctTGAGTCCAATCGAATGAACAATACAAAGCAAATTGTCCTGACCTTTCCACAACCATTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU554255 False 810 lncRNA 0.33 1 23914366 23915175
TU554254 True 1294 lncRNA 0.32 1 23914414 23915707

Neighbor

gene id symbol gene type direction distance location
LOC110525561 LOC106585505 coding downstream 2627 23888654 ~ 23911739 (-)
LOC110525220 anapc5 coding downstream 58851 23850010 ~ 23855515 (-)
LOC110525558 LOC106585502 coding downstream 81825 23814802 ~ 23832541 (-)
LOC110525555 LOC106585499 coding downstream 134646 23757804 ~ 23779720 (-)
LOC110525554 LOC106585497 coding downstream 163528 23730000 ~ 23750838 (-)
LOC110525564 NA coding upstream 89 23915796 ~ 23918064 (-)
LOC110525565 LOC106585509 coding upstream 28179 23943886 ~ 23948503 (-)
LOC110525566 apja coding upstream 54381 23970088 ~ 23972273 (-)
LOC110525568 LOC106585513 coding upstream 108839 24024546 ~ 24031999 (-)
LOC110525567 LOC106585510 coding upstream 116362 24032069 ~ 24041920 (-)
G487628 NA non-coding downstream 51359 23857862 ~ 23863007 (-)
G487620 NA non-coding downstream 74369 23839762 ~ 23839997 (-)
G487553 NA non-coding downstream 184830 23729308 ~ 23729536 (-)
LOC110525553 LOC106585496 non-coding downstream 193531 23718380 ~ 23728979 (-)
LOC110525551 LOC106585494 non-coding downstream 204236 23706557 ~ 23710228 (-)
G487655 NA non-coding upstream 12185 23927892 ~ 23928124 (-)
G487656 NA non-coding upstream 13544 23929251 ~ 23929771 (-)
G487670 NA non-coding upstream 38169 23953876 ~ 23954168 (-)
G487673 NA non-coding upstream 41867 23957574 ~ 23957782 (-)
G487681 NA non-coding upstream 52742 23968449 ~ 23968654 (-)
LOC110525552 LOC106585495 other downstream 196583 23713875 ~ 23717830 (-)
LOC110525180 hps4 other downstream 328812 23582127 ~ 23587892 (-)
G487016 NA other downstream 522304 23390017 ~ 23392062 (-)
G487022 bicdl1 other downstream 528459 23385534 ~ 23385907 (-)
G486953 NA other downstream 661005 23251286 ~ 23258106 (-)
G488386 NA other upstream 437826 24353533 ~ 24353823 (-)
LOC110525585 LOC106585524 other upstream 745190 24655788 ~ 24715090 (-)
G489038 NA other upstream 1190498 25106205 ~ 25106570 (-)
G489511 hmcn2 other upstream 1581256 25496963 ~ 25497489 (-)
LOC110525606 LOC106585545 other upstream 2364000 26271759 ~ 26283169 (-)

Expression


Co-expression Network