G487662


Basic Information

Item Value
gene id G487662
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24019572 ~ 24023100 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU554271
AATATTGTTTCAAGTCAGGTTGGTTGAGTCAAATTCCCAGTTGGCCTTATCGATAAGTAAAGAGCTTCCATCCTTCACCACCAGAGAGCAGTCTTGGTGTGTTTTCCTGTATATTCTGTTATCCCAGATGCTAACTTCCCCTTCCTAAAAAGGAACTCCGAGCACTCTTGTCTCGAATTTACACTCATTACATGTCAATTCCATACTTTCAAAGGAAATTGCAAGCTTGTTTTACTATACAGTAAAAGGTGACATATGACATGTGCCTTTTACAACTTGTGTATAAATCTTCGACCTCCATGGCCTGTGGCTATCTATTGTCCCTGCCAGGTGGTAATGGACCTGATGTCTGGAGACCAGACACAAAGCCTCACTGTGCCAGGCAATTCCAGTTACTATGTAGCATTTAACTCATGTAAGGTATGcaagaaggagagaggactggacaTTCCTCACAATGATTTGACACATTCCTGCCCTTGGGTTTCTTAAAAGCCTATATGTCTTGTTTGTCTGGCATGCTACATGTACAGTATTCATGCATGTTCATATTTCATAGCAGTTAGCTGGATTgttccaccaattcggtgccttttgaAAGTGTAACTTGGTCAACCTAATttgatttcacctaattttaacattgtCATAAAAAGCACTTTTCTTTTACCCTCTCgaggttaaataataataataataaaaagactacagggttgactgtaacaaggttggtgatttaatCTTAAATACCCTTGTGAATCTTcaaaatgactttgtcaaagcaacaaaataactttagAATGATGGTGAAAATGTTagggttaagtgggttaaaaaatcttcctagaagtcagcACGGAGGAGCATGTCAACATGCTGAATTTAGTTAATTAAATATGTGGTCTTTATtaaaagggcacttcatttaatataacacacGGTTAatattcaatattggtgcacaatttctacttaaaatattggcagcagaatggccttaatgaagagctcagtgactttcaatatgGCGCCGTCATGggatgccaactttccaacaagtcagtttgtcaaatttctgccctgctagagctgccctggtcaactgtatgtgctgttattgtgaagtggaaatgtctaggagccacaactgctcagccatgaagtggtaggccaaacaAGCTCACAGGACGGGACCGCTAAAGCATGTAGCGCgttaaaatcgtctgtcctcggctgcaacactcactactgagttccaaactacctctggaagcaacgtcagcacaagaatgattcgtcaggagcttcatgaaatgggtttccatgaccgagcagccgcacacaagtctaagatcaccattcTCAATGCCAAGCTTCtcctggagtggtgtaaagctcaccgccattctctggagggatgaatcacgcttcaccatcgggcagtccaacagacgaatctgggtttgcagaacgctacctaccccaatgcatagtgccaactgtaaagtttggtggaggaggaataatggtctggtgctgtttttcatgattgggactaggccccttagttccagtgaagggaaatcttaacggaACATTCTAGGCAATtctttgcttccaactttgtggcaacagtttggggaaggcttcctgtttcagaatggcagtgccccatgcacaaagtgaagtccatacaaaaatggtttgtcgagattggtgtggaagaacttgactgacctgtacagagctctgacctcaaccccatcgaacacctttgagactaattggaacgccgactgcgagccactTATGCTCTTGTGGCAGAATGGAACCAAGTCcgcgcagcaatgttccaatatctagtggaaagccttcccagaagagtggaggatgttatagcagcaaaggggggaccaactccatattcatgCCTGTGATTTTGTAATGAAATGTTCGACaatcaggtgtccacatacttttggtcatgtagtgtggcTCTGTAAAGACATGGATCAGCTTATTGCTACACTGAGTGACAGGTCCAGATATATGGTGATCAAAACCAAATAACAATGTGATAAGGATCATCGGATTGATCCATTGCCTGTTACTATGGATGCTTAGGCGAAGGGATTACTTTTGGGAAATCTTTGAGTTTTCATCTTTTGGGATAACGTTGAAGCCTTTCCATTTAAAAATGTTATATTCATTTGGGAAAATCATGAGGCCTGTTGGGATAAAGATCCGGCCTTTGCTTTGGGAAAATAATGGACAGTCTGACCAAAGCCTTTTTTTCAAGTTTAGAGGCAACTCAAGGTTTGTAGTCAGATGTGTCAAAGGTTTTTAACTATTATGTTGTAGGCACTTTAGGAAATTATTCAGTAGAGATTAAGACTTAATCGATGCACAACACTTATTATTGCTACAATATATCATTCCACTGAATGCTGCATGTTTGTTGTACAGGTCACCTCTTAAGACCTCACTAAAAAGCAATAAAAGGTGAATGGAGGTCAagtaaacaaaaacatatttgatttttttatttaacctggcaagaccattaagaacaaattcttatttacaatgacggcttaacccggacgacgctgggccaattgtgcgctgccatatgggactcccaatcatggccggttgtgatacagcctgaaatcgaacctgggtctgtagtgaggcCTCTAGCACTGATGCAGTGCTTGgaacactgcgccactcgggagccacatAGCCTTTCTCCACCCAAGTGTATAGTGGCCTGTATCACATATTTCCCATTTTGCAGCAATTCTAGTTTAATTTAATGCTTAAAATGTGTATATAAGACTAATTTGTAAAACGTCATTTtgtaaataatttttttttttgtgtgtgtgtacacatccaTATTTGATGATCATAATCCACCATTAGCCATAAATCATGGTAGAAACTGAATCTATATTTTAGCTAGACAATCTTGACACTAACTTTACAGTTTAAAAAGCAAACATATGCAATGCTTTCTTCCCTAGAAATATTCATGTCTTCTCAGCACAATGGTTTTAATTTAGTTTATTCAGAGAGGCCtttggtatttctatgtttttatttattttgtatttcacctttatttaaccaggtaggccagttgagaacaagttctcatttacaactgtgacctggccaagataaagcatagcagtgtgaacagacaacaacacagagttacacatggagtaaacaataaacaagtcaataacacagtagaaaaaaagagtctatatacattgtgtgcaaaaggcatgaggaggtaggcaactAATTataattttgcagattaacactggagtaatgaatgatcagatggtcatgtgcaggtagagatactggtgtgcaaaagagcagaaaagtaaataaataaaaacagtatggggatgaggtaggtaaattgggtgggctatttactgatggactatgtacagctgcagcgatcggttagctgctcagatagcagatgtttaaagttgtc
>TU554272
ATGggatgccaactttccaacaagtcagtttgtcaaatttctgccctgctagagctgccctggtcaactgtatgtgctgttattgtgaagtggaaatgtctaggagccacaactgctcagccatgaagtggtaggccaaacaAGCTCACAGGACGGGACCGCTAAAGCATGTAGCGCgttaaaatcgtctgtcctcggctgcaacactcactactgagttccaaactacctctggaagcaacgtcagcacaagaatgattcgtcaggagcttcatgaaatgggtttccatgaccgagcagccgcacacaagtctaagatcaccattcTCAATGCCAAGCTTCtcctggagtggtgtaaagctcaccgccattctctggagggatgaatcacgcttcaccatcgggcagtccaacagacgaatctgggtttgcagaacgctacctaccccaatgcatagtgccaactgtaaagtttggtggaggaggaataatggtctggtgctgtttttcatgattgggactaggccccttagttccagtgaagggaaatcttaacggaACATTCTAGGCAATtctttgcttccaactttgtggcaacagtttggggaaggcttcctgtttcagaatggcagtgccccatgcacaaagtgaagtccatacaaaaatggtttgtcgagattggtgtggaagaacttgactgacctgtacagagctctgacctcaaccccatcgaacacctttgagactaattggaacgccgactgcgagccactTATGCTCTTGTGGCAGAATGGAACCAAGTCcgcgcagcaatgttccaatatctagtggaaagccttcccagaagagtggaggatgttatagcagcaaaggggggaccaactccatattcatgCCTGTGATTTTGTAATGAAATGTTCGACaatcaggtgtccacatacttttggtcatgtagtgtggcTCTGTAAAGACATGGATCAGCTTATTGCTACACTGAGTGACAGGTCCAGATATATGGTGATCAAAACCAAATAACAATGTGATAAGGATCATCGGATTGATCCATTGCCTGTTACTATGGATGCTTAGGCGAAGGGATTACTTTTGGGAAATCTTTGAGTTTTCATCTTTTGGGATAACGTTGAAGCCTTTCCATTTAAAAATGTTATATTCATTTGGGAAAATCATGAGGCCTGTTGGGATAAAGATCCGGCCTTTGCTTTGGGAAAATAATGGACAGTCTGACCAAAGCCTTTTTTTCAAGTTTAGAGGCAACTCAAGGTTTGTAGTCAGATGTGTCAAAGGTTTTTAACTATTATGTTGTAGGCACTTTAGGAAATTATTCAGTAGAGATTAAGACTTAATCGATGCACAACACTTATTATTGCTACAATATATCATTCCACTGAATGCTGCATGTTTGTTGTACAGGTCACCTCTTAAGACCTCACTAAAAAGCAATAAAAGGTGAATGGAGGTCAagtaaacaaaaacatatttgatttttttatttaacctggcaagaccattaagaacaaattcttatttacaatgacggcttaacccggacgacgctgggccaattgtgcgctgccatatgggactcccaatcatggccggttgtgatacagcctgaaatcgaacctgggtctgtagtgaggcCTCTAGCACTGATGCAGTGCTTGgaacactgcgccactcgggagccacatAGCCTTTCTCCACCCAAGTGTATAGTGGCCTGTATCACATATTTCCCATTTTGCAGCAATTCTAGTTTAATTTAATGCTTAAAATGTGTATATAAGACTAATTTGTAAAACGTCATTTtgtaaataatttttttttttgtgtgtgtgtacacatccaTATTTGATGATCATAATCCACCATTAGCCATAAATCATGGTAGAAACTGAATCTATATTTTAGCTAGACAATCTTGACACTAACTTTACAGTTTAAAAAGCAAACATATGCAATGCTTTCTTCCCTAGAAATATTCATGTCTTCTCAGCACAATGGTTTTAATTTAGTTTATTCAGAGAGGCCtttggtatttctatgtttttatttattttgtatttcacctttatttaaccaggtaggccagttgagaacaagttctcatttacaactgtgacctggccaagataaagcatagcagtgtgaacagacaacaacacagagttacacatggagtaaacaataaacaagtcaataacacagtagaaaaaaagagtctatatacattgtgtgcaaaaggcatgaggaggtaggcaactAATTataattttgcagattaacactggagtaatgaatgatcagatggtcatgtgcaggtagagatactggtgtgcaaaagagcagaaaagtaaataaataaaaacagtatggggatgaggtaggtaaattgggtgggctatttactgatggactatgtacagctgcagcgatcggttagctgctcagatagcagatgtttaaagttgtc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU554271 False 3529 lncRNA 0.40 1 24019572 24023100
TU554272 True 2494 lncRNA 0.41 1 24019572 24022065

Neighbor

gene id symbol gene type direction distance location
LOC110525566 apja coding downstream 47299 23970088 ~ 23972273 (-)
LOC110525565 LOC106585509 coding downstream 71069 23943886 ~ 23948503 (-)
LOC110525564 NA coding downstream 101508 23915796 ~ 23918064 (-)
LOC110525561 LOC106585505 coding downstream 107833 23888654 ~ 23911739 (-)
LOC110525220 anapc5 coding downstream 164057 23850010 ~ 23855515 (-)
LOC110525568 LOC106585513 coding upstream 1446 24024546 ~ 24031999 (-)
LOC110525567 LOC106585510 coding upstream 8969 24032069 ~ 24041920 (-)
LOC110525572 LOC106585514 coding upstream 36811 24059911 ~ 24071705 (-)
LOC110525317 dgcr6 coding upstream 49514 24072614 ~ 24079048 (-)
dtx1 LOC106585516 coding upstream 106300 24129400 ~ 24184369 (-)
G487708 NA non-coding downstream 1546 24017745 ~ 24018026 (-)
G487681 NA non-coding downstream 50918 23968449 ~ 23968654 (-)
G487673 NA non-coding downstream 61790 23957574 ~ 23957782 (-)
G487670 NA non-coding downstream 65404 23953876 ~ 23954168 (-)
G487656 NA non-coding downstream 89801 23929251 ~ 23929771 (-)
G487795 NA non-coding upstream 168150 24191250 ~ 24191474 (-)
G487798 NA non-coding upstream 171662 24194762 ~ 24195075 (-)
G487801 NA non-coding upstream 174966 24198066 ~ 24198697 (-)
G487805 NA non-coding upstream 178822 24201922 ~ 24202251 (-)
G487807 NA non-coding upstream 181781 24204881 ~ 24205232 (-)
LOC110525552 LOC106585495 other downstream 301789 23713875 ~ 23717830 (-)
LOC110525180 hps4 other downstream 434018 23582127 ~ 23587892 (-)
G487016 NA other downstream 627510 23390017 ~ 23392062 (-)
G487022 bicdl1 other downstream 633665 23385534 ~ 23385907 (-)
G486953 NA other downstream 766211 23251286 ~ 23258106 (-)
G488386 NA other upstream 330433 24353533 ~ 24353823 (-)
LOC110525585 LOC106585524 other upstream 637797 24655788 ~ 24715090 (-)
G489038 NA other upstream 1083105 25106205 ~ 25106570 (-)
G489511 hmcn2 other upstream 1473863 25496963 ~ 25497489 (-)
LOC110525606 LOC106585545 other upstream 2256607 26271759 ~ 26283169 (-)

Expression

G487662 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
End of interactive chart.

G487662 Expression in each Bioproject

Bar chart with 21 bars.
G487662 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.

Co-expression Network