G487362 (LOC106585514)


Basic Information

Item Value
gene id G487362
gene name LOC106585514
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24059920 ~ 24062782 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU553881
aaaacatttatttgtcacGAAATAACACAGCTTCTTTTAGACTTTATACAACAAAAAATACTTAGAATTTGAATGTGTAAGTACAGAGTACATAGGTACAGTCAGAGCCCATAGCGCATTGTGCTTACTGCCACACAAGACAGAGAGCGTAACTCATCGAGGTGAGGAAATGTTCAGCTTGCCAAAAGCACCATAGTGTCAACACCTGTCACTTGCCCACGCAGGAAAAACAGAGACACACTGGTAGAGAGACACATACAGTCGTTTGCAGTTAAAATCTTAAACTATGTGCAAAGTTGTACAAAAATCAATTTAATATTTTGTTATCCCCACATTAACCAACATTTGATTACTTCAAAGGCTGTATCTGTTGTTGAAATCAATTGAATGGAATATAGTAGTTTACAATATAATATCCTATGAATAAATACTGAGATTATAACAGGGTAAACTACTTGGATAGAGGTGAAAAGCTACCTGAACAACAAGTTGTTTAGATTTCACGTAAGCTTTGGGAATCATTCTGTACTCATGAAAACATCTTTAAGGCCATTGGTTGCTTGTGtcatatatttacatatacaaATGTATGTTTACAATAACTAATAAATAGTGATAAATAAGAGACTTTTAAAACAAACATCTTTTTGAGTACAACACTAAGGTGAGCTACAGACACGTGTGAGGTTGGTAGCCGGTAGTGAGGGACTCATGCTTATTTGTCATCATTCTAAGGACTGTGATATATAGAAAACGCTAATAACATCAAGGCAATGCTGTagttacattattattatacagATAAATCGTAGACGTTTTACCGCAATCTCCAAACGTGACAAACAAATATACACCTTATAGGTAACAAAATAATCCGTTCTCAGGACTTGACTGAAAACTTTAGCTATGGGAATGTTATGATTATCACGTTGAGACAACGTTACATTGTCATGACATCTTACTGCCCTCTCGAACACTGTGCTATCAGACAGGGTAGTGAGTAACTGGGTGTGAGAGTGCAATCCCTCTCTGAGGAGGTCAGTGTAATCCAGCACTGCGAGTGAGAGTGATCTGTGCGTGTATGTAATCTAGATCAAGCTATTGGTCAACCGCAGGGACTGCTGCAAATCTGTCGGATTACAGAGGTCTCATGAGGATAAAAGATGTCCTATGGCTGGCATAGTCTGACAAAACGCTCAATCCCTGTTTGTTAATATGCTTCTAAACAGCAGCACCAAATACCCTGTTCAGGTACATCATGAACTGGGTTTGTGCTTGCCTTACAAAAAGCATATATTAAAACACAAGTTTATAACTCTCGTCTCGCATTATCACTGTTGTGTATGAGGAGAAATGAGAACAAAACCATAGCTAAAATAATCCAGGTGCTTTTATATTAGATGGTTGTATAAACTAATCTCATGCTAGCACACAGAAGGGGAATGGGTCGCTGTCTAGTTCTTGTGCATTGGGGGAATAACCATTCTTAGTAGATATTAGGCTGATTGCAAAATCTGGGACACATAAGAGTGAGTGAGGTCATTGGATGGGAGTCAGTGGATTAAGTGAGAGGTTGAAAGGCCAACTCCGCCTTAGAAGAAGAGAGTGACAATCTCATGTGATGGAGACAGAGAACATTAACAAGTGGAGTCGGGTCATTATGATACGAAGCGAGGtacaaaaacatcccaaaacAGAACATAATATGTGTGTGATATGCCATCAGTGAAATGCAAAATTAAAATGATAAAATAGACTGTTTCACAGCTCAGAAACTACATGAAACAAGTCCGAAATAATCATTAAAatagaaaatgtatgtaaatgatTTGCGTTTGGCTGAGCAGCCACTAGTGCGGGGGAATGAGGGGGATCTTGAGGTGGTCCCAGGGGTTGTAAGTGGACCCACATGACCCACTGACAGAACCTAGTCTCTCCTCAGGCAAGAataatgcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgagagaAAGCAAATGTGAATATGTGTTTGTACATGGGTGTGTGTAAACAAAGGTCCATTCATTCCAGTGCTTACAAAATGAAAAATGCAGCTTATCAACATGACTCAATGTATGCTATGACCTAAAGCACCATCCTACTTCCAAACACATTCAATTGTGAGTGACTGAGAGACATTAAAAAGCAGATCAATTGAGGAGTTGAGAGAAATGCTAACAAGGAAATAACACCTGTGCTGGTTTATCTaccattttttttgtaaatacagTGATTATAACCAATAGCAATATCCTAAACAATGCTAGATAGCTTTATTACTATGTTCCCATATTAAGAGATACAatatgtaaaaataaatataaatatgtttCATAATGAGAGAGCGTAAATCTCATTTGTGTGATGTGTACTTACTAACGCAGAGAAACACAGCCTTGTGGCAGTACACACTGATTGTATGAGGCCAGTCACGAGAGGGAagtcagaggagaagagagtgaggTAATGTATGAGTAGGAGCAGATAGATGATAAACGGCCCACTGAAATAAAGATGGCTCCCTTCCTAGTTCCCACACATCATCTCTTTGCCTGCTGCTCTTCAGCAGACTGGGCGGGGGAGGGGGTGGTGTGGAGGGCGCTGGCGTCCCCGTGTCCGTTCGGCTGCACTGACTGGACTGTCTCTACCAGGCTGCCACTAGGGAGCACCACGTACCTGGCAGCCATGTCCTTGGGCTGCAGCTCCCTCAGGCCCTCCTTACTGTGCCATATCCCATAGCCAAAATACACCAGTAG

Function

NR:

description
PREDICTED: cationic amino acid transporter 4-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU553881 True 2783 lncRNA 0.40 2 24059920 24062782

Neighbor

gene id symbol gene type direction distance location
LOC110525569 LOC106585512 coding upstream 13718 24042520 ~ 24046202 (+)
LOC110525570 LOC106585512 coding upstream 17561 24042029 ~ 24042359 (+)
LOC110525298 LOC106585338 coding upstream 118042 23925846 ~ 23941878 (+)
LOC110525563 LOC106585507 coding upstream 145623 23911741 ~ 23914297 (+)
LOC110525560 LOC106585504 coding upstream 174952 23857854 ~ 23884968 (+)
LOC110525573 LOC106585515 coding downstream 17509 24080291 ~ 24122599 (+)
rflna LOC106585519 coding downstream 238954 24301736 ~ 24314535 (+)
stx2b LOC106585525 coding downstream 653564 24716346 ~ 24724878 (+)
LOC110525587 LOC106585527 coding downstream 671050 24733832 ~ 24872673 (+)
LOC110525720 LOC106585530 coding downstream 934782 24997564 ~ 25054975 (+)
G487341 LOC106585510 non-coding upstream 25494 24033719 ~ 24034426 (+)
G487334 NA non-coding upstream 37820 24019541 ~ 24022100 (+)
G487331 NA non-coding upstream 43146 24016212 ~ 24016774 (+)
G487330 NA non-coding upstream 46113 24013410 ~ 24013807 (+)
G487307 NA non-coding upstream 86395 23973279 ~ 23973525 (+)
G487401 LOC106585516 non-coding downstream 66633 24129415 ~ 24134143 (+)
G487442 NA non-coding downstream 141083 24203865 ~ 24204080 (+)
G487372 NA non-coding downstream 144242 24207024 ~ 24209275 (+)
G487453 NA non-coding downstream 161863 24224645 ~ 24224959 (+)
G487455 NA non-coding downstream 163481 24226263 ~ 24226582 (+)
G487146 LOC106585492 other upstream 391993 23653120 ~ 23667927 (+)
G487078 LOC106585486 other upstream 528121 23528740 ~ 23531799 (+)
LOC110525518 LOC106585474 other upstream 868003 23079630 ~ 23197514 (+)
G486127 NA other upstream 1385468 22674242 ~ 22674452 (+)
G488049 NA other downstream 517179 24579961 ~ 24586313 (+)
G488078 NA other downstream 568187 24630969 ~ 24631396 (+)
G488258 NA other downstream 875987 24938769 ~ 24939272 (+)
si:dkey-191c17.2 LOC106585342 other downstream 1576079 25638816 ~ 25641178 (+)
G489447 NA other downstream 1620904 25683686 ~ 25684311 (+)

Expression


Co-expression Network