G487401 (LOC106585516)


Basic Information

Item Value
gene id G487401
gene name LOC106585516
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24129415 ~ 24134143 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU553924
CGTTGAGGGCACATTTATTTTCCAcatgaaacaaacaaacatgcaACAAAATCATCCCAATCCAATAGAGACTGGTTCAGATTCAGAGCCCTTTAATCAATGTCTCTAATCTTGCCTTTATTTTTTTTCATTCATTTAATTTTACACTTCAAATCTCCATTTCTCTTTGTGTGTTTAATTGAATGTTTTATATGTAATATGTTGCTTCTGATGAGAAATTAAATGTGAATGTTAAACTATAACCACATTGTTCTCTGACATTTTATCTGTATAAAATAGGCATTGAAAATGCAGATGATGACCTGATGACCTTTTatgtgaaacagagagaggagtagCAAAGTGCTATTTCATGCTCTCTCCATCAAACCCTCTTCAGAGATCAAAACACACAGATAAACAGTGGAGTATGGAGCAGTCCACCATGCCAGTCCACACAGGACACAGCTCGATGACATTTCTAATGACTTCATAACATTTTTCACCTAGAACATTTTTGCCTTGTCAGCAGACTTGTTGACGTCTTGAGTAACATGCACTtctatgacattttttttttatttcagcccccaaatgtctactgtttgaaTATTTTAGAAGCTTAAACCAagcattttcacacacacacacacacacaccaatttgtTGCAGGCATATCTGTGCACACAGATAAGTGCAATACGCTGTTGGATGTTTTCAATATGATTGTGACACCTCATGAGAAAGGATCCCACACCTAATCAATATATGCTATGGAGAACCGTATGGAATGTGTCTTTAATTACTGTAATATAACAATGTTGCACACTATGAATGCTCAATTTAAACCAATCAATCTTTTAAAGAATACATCAAAAATATATGTGTTGTCCTATATGGAGCATTTGAGCTATACCTTTGGATCACTGTCTCCTTTGGTCACAAATGGACACGCCTTACAGAATGTTGAACATCCATTCTTCTGTCCCCAACACCTCCTGATCCCTCCTGCTACACTTAAGGTACAAATTGGTCGCATATATAATTGCATAAACTCTATTCCTCTGTCCAAAACTAGACCATAAAATGTCTGCTCACAATAAAGCTCCCCATGTACAGACCACTGAAAGTATACGGACTGTATGTGCACACCTGAAAAGCGGAGGAGTCCTAGACAATGAAATATTTGATTCATATTACAGGTACATATGTAAAGCATTTGGAGACTGGAAATCTGAGCATGATCTGGTCTTGAAATATTAACTGAAAACATTTTCCCTGTACAACTCAATGAGTCTCACTTAAAATGGAAAATTCCCTGATAAGACTGAAATCATTTCTTTCATGTTTTTCCCTATTACGAGGGTGACAAAAACCTTAACGTGTCAACTTGCAAAATAAATGAAAAGAAATGAAAAGACCAAATGGCTCTTGTTTTTCATTCTCACCTGTTTGAGGTACTGACAGTATCCTCCTAGTGGTTCTCTTAGGTTATACAAGGTAAATAACAGAATTAGAATTAGAATTCTATGGTCAATGACCCATCGGGGGTATAGGGTCGACGTCATGCTGCTAAACTCCCCCCAGCCAATAATAAAGAGGAACTGCTGTACTTACTGAATCCCTCAGGGGCTCCACTTCAGAGAATCTACATTAACAACAGCAGCAAACGCTAAGACTACTGCTAATACAGTATAAGACGCTCATAACCTAGCATACACATTTCAACAGTCCCTGACATACTGGCAAATCACATATGCCAGATGTGATCTACTCATTTTacatatttctgtgtgtatatagatatgtggGCGGGTAGATGTGACTGTTTATTTTCTTATATAGAAGagtataaaaataaattaaacttATACCATATGACTCAAATTGAGCATACGTGTACATTTAAAAGGTAGATCACATTTGCAAATGtatagatatatactgtatatatatatatttgaagcAATACAAGACACGTTTataaacatgaaaataaaaaaacagcagCTATAGTAGCCAATACATTTCAAGACATCTTCCAAAAACGAAAGGATTAATTAAAGAAAAGTGCTACGGAAGACTATGATTCAGTCCAAGATATTCAAAAGCATTTCAAGGATCAAAACCCTGTGAAATGGGTGGCGCACCATAAAAACCTCAACAAGAATCTCTTCTGGATTATACCAACATCTCCACTCATTACTATGGATCAGTTAATATCAACAAGGAGCACACCATTTTAACAAACATCTACCTGGTCGGTTAGACGCTTATGTATGAACCTATATCAGGTTTCACTTCCAAAGGCATCCGCTCTGGTTGGCACACCATTAGAATAGACATTTACTGTGAGACGgctgggtcctcagatcctctgaCTGGCTCTCTGTCAGGTGGTGCATTTGAACAATCAATAGACTCATTGGCCAATGGTGCAAAGCCCTGTGAAACAGCCCTGTGTAGCCAATCAGAcatgtcctctctcctttctgaGAATCACATAGCCGTGACCGTCCACCTCAGATCTACAGACATCTTTGGTGTGGAAAACCACCAAGATAAAACTAGCAATAGGCCTCACTTTTAAAAGACTCTCACTAGCAACCACATCTGCATGTCATAAGTTCAACTGTGTAGATTTGGTGCGAATTAGACTAATGCAATTCTGATCTGTAATTGCAACCATGCTTTTCAAATTATATAAGTAAATTCTGCATATTAAAATTCTCCTGAAGATTTCCACACAAACACCAACTACAACTTGATAAATCACTTCCCTATTCTTTCAAAAATGCACATCTGAAAAAAGTGGAATAAATGTGGCCAGACATGTAGAGCCTTTGGAGCCCTAGCCAACTGTTTAGCAAAAGTCGCAGTTATGCGGTCAACATTCAATGCAAACTCTGGGCCATATGTTTCGGTGGTGAACATTAACAGACATCTCCTCCAATGCTATGATGTTAGTACAGAAGAGGAGGTTCAATATCCTGTCTCAGAGGAATCAATGACTGTTGATGTGCATCAATGTCTAAACCCCACAATAGCCAGTACACAATGAGATCAGTTTTAAATCCTGTCTTTACATTCCTTTAACCTATCAGGCTGAAATTTTGGCAAAAACACACCTGCTCAAGGCATGGACAAAGAGACATCAGTCGGAAAAGTTTTACACTTATGTTTAGGTAAATGCAAATAACAGTATAACACAATCATGACGTTATCGTGTCATTATTATGTCATTTGCTATATATTAGTTTGCCCACATACAGAACATGAGGGTCTGTAGGTCTGTTCTGGGTGTGGGGAGCAAAAGACGGCTATCTGGTCTGCATGTTGCCTCCTCATTCAGAGGCCCTGTCAGATATGGATATGGGAGGTGGTCCTCTGGggcctctctgtccccccctctcagTCCTTCAGGTTGTCCTGTCCCACCCCTTGGGCTGACAGCTCTGTCAGAACGTTGTCCAGGTAGTTGGGGTCTGGGTAGCCGTGCCCCGTCAGGTTGGAGCCAAACTCTGTCTTGTGGTGGATCTCATTCCACACCACTGTGTCTGACTCTCCCGTGGTGCTGGACATGCCGATGGTGAAGATGAGGCGGCGGTCCCACGCCATGATCAGGAGCTTCAGGACCTGGGGACAGACAGATGAGAGCCCAGGTAGATGACATACAGCAGCTCAGAGTGCACTGTAATCACCATCTCTCTTTCTAGTTCATTCAAGGGGGGTGTGGAAGGGAATTGGGATACAGTACCTAGTCAGTTCCACAActaaatgcattcaaccgaaatgtgtcttccg
>TU553925
CGTTGAGGGCACATTTATTTTCCAcatgaaacaaacaaacatgcaACAAAATCATCCCAATCCAATAGAGACTGGTTCAGATTCAGAGCCCTTTAATCAATGTCTCTAATCTTGCCTTTATTTTTTTTCATTCATTTAATTTTACACTTCAAATCTCCATTTCTCTTTGTGTGTTTAATTGAATGTTTTATATGTAATATGTTGCTTCTGATGAGAAATTAAATGTGAATGTTAAACTATAACCACATTGTTCTCTGACATTTTATCTGTATAAAATAGGCATTGAAAATGCAGATGATGACCTGATGACCTTTTatgtgaaacagagagaggagtagCAAAGTGCTATTTCATGCTCTCTCCATCAAACCCTCTTCAGAGATCAAAACACACAGATAAACAGTGGAGTATGGAGCAGTCCACCATGCCAGTCCACACAGGACACAGCTCGATGACATTTCTAATGACTTCATAACATTTTTCACCTAGAACATTTTTGCCTTGTCAGCAGACTTGTTGACGTCTTGAGTAACATGCACTtctatgacattttttttttatttcagcccccaaatgtctactgtttgaaTATTTTAGAAGCTTAAACCAagcattttcacacacacacacacacacaccaatttgtTGCAGGCATATCTGTGCACACAGATAAGTGCAATACGCTGTTGGATGTTTTCAATATGATTGTGACACCTCATGAGAAAGGATCCCACACCTAATCAATATATGCTATGGAGAACCGTATGGAATGTGTCTTTAATTACTGTAATATAACAATGTTGCACACTATGAATGCTCAATTTAAACCAATCAATCTTTTAAAGAATACATCAAAAATATATGTGTTGTCCTATATGGAGCATTTGAGCTATACCTTTGGATCACTGTCTCCTTTGGTCACAAATGGACACGCCTTACAGAATGTTGAACATCCATTCTTCTGTCCCCAACACCTCCTGATCCCTCCTGCTACACTTAAGGTACAAATTGGTCGCATATATAATTGCATAAACTCTATTCCTCTGTCCAAAACTAGACCATAAAATGTCTGCTCACAATAAAGCTCCCCATGTACAGACCACTGAAAGTATACGGACTGTATGTGCACACCTGAAAAGCGGAGGAGTCCTAGACAATGAAATATTTGATTCATATTACAGGTACATATGTAAAGCATTTGGAGACTGGAAATCTGAGCATGATCTGGTCTTGAAATATTAACTGAAAACATTTTCCCTGTACAACTCAATGAGTCTCACTTAAAATGGAAAATTCCCTGATAAGACTGAAATCATTTCTTTCATGTTTTTCCCTATTACGAGGGTGACAAAAACCTTAACGTGTCAACTTGCAAAATAAATGAAAAGAAATGAAAAGACCAAATGGCTCTTGTTTTTCATTCTCACCTGTTTGAGGTACTGACAGTATCCTCCTAGTGGTTCTCTTAGGTTATACAAGGTAAATAACAGAATTAGAATTAGAATTCTATGGTCAATGACCCATCGGGGGTATAGGGTCGACGTCATGCTGCTAAACTCCCCCCAGCCAATAATAAAGAGGAACTGCTGTACTTACTGAATCCCTCAGGGGCTCCACTTCAGAGAATCTACATTAACAACAGCAGCAAACGCTAAGACTACTGCTAATACAGTATAAGACGCTCATAACCTAGCATACACATTTCAACAGTCCCTGACATACTGGCAAATCACATATGCCAGATGTGATCTACTCATTTTacatatttctgtgtgtatatagatatgtggGCGGGTAGATGTGACTGTTTATTTTCTTATATAGAAGagtataaaaataaattaaacttATACCATATGACTCAAATTGAGCATACGTGTACATTTAAAAGGTAGATCACATTTGCAAATGtatagatatatactgtatatatatatatttgaagcAATACAAGACACGTTTataaacatgaaaataaaaaaacagcagCTATAGTAGCCAATACATTTCAAGACATCTTCCAAAAACGAAAGGATTAATTAAAGAAAAGTGCTACGGAAGACTATGATTCAGTCCAAGATATTCAAAAGCATTTCAAGGATCAAAACCCTGTGAAATGGGTGGCGCACCATAAAAACCTCAACAAGAATCTCTTCTGGATTATACCAACATCTCCACTCATTACTATGGATCAGTTAATATCAACAAGGAGCACACCATTTTAACAAACATCTACCTGGTCGGTTAGACGCTTATGTATGAACCTATATCAGGTTTCACTTCCAAAGGCATCCGCTCTGGTTGGCACACCATTAGAATAGACATTTACTGTGAGACGgctgggtcctcagatcctctgaCTGGCTCTCTGTCAGGTGGTGCATTTGAACAATCAATAGACTCATTGGCCAATGGTGCAAAGCCCTGTGAAACAGCCCTGTGTAGCCAATCAGAcatgtcctctctcctttctgaGAATCACATAGCCGTGACCGTCCACCTCAGATCTACAGACATCTTTGGTGTGGAAAACCACCAAGATAAAACTAGCAATAGGCCTCACTTTTAAAAGACTCTCACTAGCAACCACATCTGCATGTCATAAGTTCAACTGTGTAGATTTGGTGCGAATTAGACTAATGCAATTCTGATCTGTAATTGCAACCATGCTTTTCAAATTATATAAGTAAATTCTGCATATTAAAATTCTCCTGAAGATTTCCACACAAACACCAACTACAACTTGATAAATCACTTCCCTATTCTTTCAAAAATGCACATCTGAAAAAAGTGGAATAAATGTGGCCAGACATGTAGAGCCTTTGGAGCCCTAGCCAACTGTTTAGCAAAAGTCGCAGTTATGCGGTCAACATTCAATGCAAACTCTGGGCCATATGTTTCGGTGGTGAACATTAACAGACATCTCCTCCAATGCTATGATGTTAGTACAGAAGAGGAGGTTCAATATCCTGTCTCAGAGGAATCAATGACTGTTGATGTGCATCAATGTCTAAACCCCACAATAGCCAGTACACAATGAGATCAGTTTTAAATCCTGTCTTTACATTCCTTTAACCTATCAGGCTGAAATTTTGGCAAAAACACACCTGCTCAAGGCATGGACAAAGAGACATCAGTCGGAAAAGTTTTACACTTATGTTTAGGTAAATGCAAATAACAGTATAACACAATCATGACGTTATCGTGTCATTATTATGTCATTTGCTATATATTAGTTTGCCCACATACAGAACATGAGGGTCTGTAGGTCTGTTCTGGGTGTGGGGAGCAAAAGACGGCTATCTGGTCTGCATGTTGCCTCCTCATTCAGAGGCCCTGTCAGATATGGATATGGGAGGTGGTCCTCTGGggcctctctgtccccccctctcagTCCTTCAGGTTGTCCTGTCCCACCCCTTGGGCTGACAGCTCTGTCAGAACGTTGTCCAGGTAGTTGGGGTCTGGGTAGCCGTGCCCCGTCAGGTTGGAGCCAAACTCTGTCTTGTGGTGGATCTCATTCCACACCACTGTGTCTGACTCTCCCGTGGTGCTGGACATGCCGATGGTGAAGATGAGGCGGCGGTCCCACGCCATGATCAGGAGCTTCAGGACCTCCTGCCTTTGTTATTGTCTGGGAGGTAGCAGTGCCGAGGGAACCCCCTAGCGCTGAACTTCTTCCCTGGGTTGGGATGCTCTGTGGTCTGGTGAAAAGGACAGAAACAGTCAcaaccactctctttctctttcaattAACATTCAGTCCAGAGGGAAATGTCAAATGTGCCCCCGGGACGAGCTTGTATATTCGTAGTCTGACTACTCTGGTGGCTTTATTTGCACTCTTTTAAAGCATTCGTTTTTGGGGAAATGGCTGCCCCTCCCAAATGAACCCTTTCCCCCTTTCATCAAGAAACATGTTCTTTATAAAAGCTGTAAAACAACCAATTAACTGTCATGCTGTGTGATGCAGGTCTTATGTGTTGACATGCCACACCATACTCATTGTACTCCACTCTACTTCAGAATGTACTGTATCATTACTATATCATGACTTTCTTAGACAGAATACAGCTGTCAGTGTAGATGTGTTAAAAGGGGGGAGTGAGGAGTGTGAGTGGTGTGCAGGGGCATGTTGTTCTGCTGCAGTGTAGATGTGTTAAAAGGGGGGAGTGAGGAGTGTGAGTGGTGTGCAGGGGCATGTTGTTCTGCTGCAGTGTAGATGTGTTAAAAGGGGGGAGTGAGGAGTGTGAGTGGTGTGCAGGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU553924 False 3783 lncRNA 0.40 2 24129415 24133225
TU553925 True 4266 lncRNA 0.41 3 24129415 24134143

Neighbor

gene id symbol gene type direction distance location
LOC110525573 LOC106585515 coding upstream 6816 24080291 ~ 24122599 (+)
LOC110525569 LOC106585512 coding upstream 83213 24042520 ~ 24046202 (+)
LOC110525570 LOC106585512 coding upstream 87056 24042029 ~ 24042359 (+)
LOC110525298 LOC106585338 coding upstream 187537 23925846 ~ 23941878 (+)
LOC110525563 LOC106585507 coding upstream 215118 23911741 ~ 23914297 (+)
rflna LOC106585519 coding downstream 167593 24301736 ~ 24314535 (+)
stx2b LOC106585525 coding downstream 582203 24716346 ~ 24724878 (+)
LOC110525587 LOC106585527 coding downstream 599689 24733832 ~ 24872673 (+)
LOC110525720 LOC106585530 coding downstream 863421 24997564 ~ 25054975 (+)
LOC110525590 LOC106585531 coding downstream 981240 25115383 ~ 25162130 (+)
G487357 NA non-coding upstream 10723 24056876 ~ 24118692 (+)
G487362 LOC106585514 non-coding upstream 66633 24059920 ~ 24062782 (+)
G487341 LOC106585510 non-coding upstream 94989 24033719 ~ 24034426 (+)
G487334 NA non-coding upstream 107315 24019541 ~ 24022100 (+)
G487331 NA non-coding upstream 112641 24016212 ~ 24016774 (+)
G487442 NA non-coding downstream 69722 24203865 ~ 24204080 (+)
G487372 NA non-coding downstream 72881 24207024 ~ 24209275 (+)
G487453 NA non-coding downstream 90502 24224645 ~ 24224959 (+)
G487455 NA non-coding downstream 92120 24226263 ~ 24226582 (+)
G487456 NA non-coding downstream 94770 24228913 ~ 24229128 (+)
G487146 LOC106585492 other upstream 461488 23653120 ~ 23667927 (+)
G487078 LOC106585486 other upstream 597616 23528740 ~ 23531799 (+)
LOC110525518 LOC106585474 other upstream 937498 23079630 ~ 23197514 (+)
G486127 NA other upstream 1454963 22674242 ~ 22674452 (+)
G488049 NA other downstream 445818 24579961 ~ 24586313 (+)
G488078 NA other downstream 496826 24630969 ~ 24631396 (+)
G488258 NA other downstream 804626 24938769 ~ 24939272 (+)
si:dkey-191c17.2 LOC106585342 other downstream 1504718 25638816 ~ 25641178 (+)
G489447 NA other downstream 1549543 25683686 ~ 25684311 (+)

Expression


Co-expression Network