G487442


Basic Information

Item Value
gene id G487442
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24203865 ~ 24204080 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU553972
gctgcataaatgattaaatatgccagggagatagtattactttcttagctatagtatacataagtgtatgtagtaagctgttagtagcccatgtgcctcaccctaataatttggccCATTTCcccctcataatttagcctactctTCTGAcgtggtggtgcacatgtagcctatagcctgttgtACAGAAATATAATCATTTGAATATTTTAAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU553972 True 216 lncRNA 0.38 1 24203865 24204080

Neighbor

gene id symbol gene type direction distance location
LOC110525573 LOC106585515 coding upstream 81266 24080291 ~ 24122599 (+)
LOC110525569 LOC106585512 coding upstream 157663 24042520 ~ 24046202 (+)
LOC110525570 LOC106585512 coding upstream 161506 24042029 ~ 24042359 (+)
LOC110525298 LOC106585338 coding upstream 261987 23925846 ~ 23941878 (+)
LOC110525563 LOC106585507 coding upstream 289568 23911741 ~ 23914297 (+)
rflna LOC106585519 coding downstream 97656 24301736 ~ 24314535 (+)
stx2b LOC106585525 coding downstream 512266 24716346 ~ 24724878 (+)
LOC110525587 LOC106585527 coding downstream 529752 24733832 ~ 24872673 (+)
LOC110525720 LOC106585530 coding downstream 793484 24997564 ~ 25054975 (+)
LOC110525590 LOC106585531 coding downstream 911303 25115383 ~ 25162130 (+)
G487401 LOC106585516 non-coding upstream 69722 24129415 ~ 24134143 (+)
G487357 NA non-coding upstream 85173 24056876 ~ 24118692 (+)
G487362 LOC106585514 non-coding upstream 141083 24059920 ~ 24062782 (+)
G487341 LOC106585510 non-coding upstream 169439 24033719 ~ 24034426 (+)
G487334 NA non-coding upstream 181765 24019541 ~ 24022100 (+)
G487372 NA non-coding downstream 2944 24207024 ~ 24209275 (+)
G487453 NA non-coding downstream 20565 24224645 ~ 24224959 (+)
G487455 NA non-coding downstream 22183 24226263 ~ 24226582 (+)
G487456 NA non-coding downstream 24833 24228913 ~ 24229128 (+)
G487458 NA non-coding downstream 32019 24236099 ~ 24236341 (+)
G487146 LOC106585492 other upstream 535938 23653120 ~ 23667927 (+)
G487078 LOC106585486 other upstream 672066 23528740 ~ 23531799 (+)
LOC110525518 LOC106585474 other upstream 1011948 23079630 ~ 23197514 (+)
G486127 NA other upstream 1529413 22674242 ~ 22674452 (+)
G488049 NA other downstream 375881 24579961 ~ 24586313 (+)
G488078 NA other downstream 426889 24630969 ~ 24631396 (+)
G488258 NA other downstream 734689 24938769 ~ 24939272 (+)
si:dkey-191c17.2 LOC106585342 other downstream 1434781 25638816 ~ 25641178 (+)
G489447 NA other downstream 1479606 25683686 ~ 25684311 (+)

Expression


Co-expression Network