G487456


Basic Information

Item Value
gene id G487456
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24228913 ~ 24229128 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU553986
GTATTCCCGTTGTGGTTGGGATATATTGACTAAATTATCAGGAAATTTTGGAAAAATGTTCCCTTCCAAATTCACCAGAAACAACCATTTCACAGCTGGACTGGACCCACCTAGAAGGCTGTTGCTAACACTTCAGCCCACCTAAaccttttcaaatcaaatgttattcctcacatgcttcgtaaacaacaggtgtagactaacagtgaaatggtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU553986 True 216 lncRNA 0.40 1 24228913 24229128

Neighbor

gene id symbol gene type direction distance location
LOC110525573 LOC106585515 coding upstream 106314 24080291 ~ 24122599 (+)
LOC110525569 LOC106585512 coding upstream 182711 24042520 ~ 24046202 (+)
LOC110525570 LOC106585512 coding upstream 186554 24042029 ~ 24042359 (+)
LOC110525298 LOC106585338 coding upstream 287035 23925846 ~ 23941878 (+)
LOC110525563 LOC106585507 coding upstream 314616 23911741 ~ 23914297 (+)
rflna LOC106585519 coding downstream 72608 24301736 ~ 24314535 (+)
stx2b LOC106585525 coding downstream 487218 24716346 ~ 24724878 (+)
LOC110525587 LOC106585527 coding downstream 504704 24733832 ~ 24872673 (+)
LOC110525720 LOC106585530 coding downstream 768436 24997564 ~ 25054975 (+)
LOC110525590 LOC106585531 coding downstream 886255 25115383 ~ 25162130 (+)
G487455 NA non-coding upstream 2331 24226263 ~ 24226582 (+)
G487453 NA non-coding upstream 3954 24224645 ~ 24224959 (+)
G487372 NA non-coding upstream 19638 24207024 ~ 24209275 (+)
G487442 NA non-coding upstream 24833 24203865 ~ 24204080 (+)
G487401 LOC106585516 non-coding upstream 94770 24129415 ~ 24134143 (+)
G487458 NA non-coding downstream 6971 24236099 ~ 24236341 (+)
G487459 NA non-coding downstream 8643 24237771 ~ 24238005 (+)
G487461 NA non-coding downstream 11654 24240782 ~ 24241082 (+)
G487465 NA non-coding downstream 17778 24246906 ~ 24247127 (+)
G487922 NA non-coding downstream 163948 24393076 ~ 24395465 (+)
G487146 LOC106585492 other upstream 560986 23653120 ~ 23667927 (+)
G487078 LOC106585486 other upstream 697114 23528740 ~ 23531799 (+)
LOC110525518 LOC106585474 other upstream 1036996 23079630 ~ 23197514 (+)
G486127 NA other upstream 1554461 22674242 ~ 22674452 (+)
G488049 NA other downstream 350833 24579961 ~ 24586313 (+)
G488078 NA other downstream 401841 24630969 ~ 24631396 (+)
G488258 NA other downstream 709641 24938769 ~ 24939272 (+)
si:dkey-191c17.2 LOC106585342 other downstream 1409733 25638816 ~ 25641178 (+)
G489447 NA other downstream 1454558 25683686 ~ 25684311 (+)

Expression


Co-expression Network